Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq88411 306 1e-80 seq21231 114 4e-23 seq1169 102 2e-19 seq7855 84.2 7e-14 >seq88411 Length=793 Score = 306 bits (338), Expect = 1e-80 Identities = 241/284 (85%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||| Sbjct 469 GTACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC 528 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 529 TCCCCGAGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 588 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| Sbjct 589 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGTCACCATGGT 648 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| || | ||||||||||||||||||||||||| ||| ||| || | |||||| | Sbjct 649 AGGCACGTAGCGTACCATCGAAAGTTGATAGGGCAGACATTCGAAAGAGACGTCGCCGCC 708 Query 240 TC--AAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAA 279 | | ||||| ||||| | | | ||||| || ||||||| Sbjct 709 ACGGAGGGCCA-GCGATCGGCTCGAGGTTATCTAGAGTCACCAA 751 >seq21231 Length=42110 Score = 114 bits (126), Expect = 4e-23 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 ||||| | ||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 25654 GTCGGAAGTGGGTAATTTGGGCGCCTGCTGCCTTCCTTGGATGTTGTAGCCGTTTCTCAG 25713 Query 127 GCTCCCTCTCCGGAATCGAAC 147 || ||||||| ||||| |||| Sbjct 25714 GCACCCTCTCTGGAATTGAAC 25734 >seq1169 Length=155714 Score = 102 bits (112), Expect = 2e-19 Identities = 86/105 (82%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 82 TTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAA 141 |||| | ||||| |||||||| ||||| |||||||||||||||||| ||||||||| ||| Sbjct 2223 TTTGTGTGCCTGATGCCTTCCATGGATCTGGTAGCCGTTTCTCAGGTTCCCTCTCCAGAA 2164 Query 142 TCGAACCC---TAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 ||||| |||||||| ||||||| | |||||||||||| Sbjct 2163 AAAAACCCTTATAATTCCCTGTTACCCATGTTCACCATGGTAGGC 2119 >seq7855 Length=172721 Score = 84.2 bits (92), Expect = 7e-14 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 360 GAATTACCACGGTTATCCATGTA-GTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 ||||| |||| |||||||| ||| | || | |||||| ||| |||||||||||||| Sbjct 138350 GAATTGCCACAGTTATCCAAGTAAGGGTGGAGCGATCAAAAGAACCATAACTGATTTAAT 138291 Query 419 GAGCCATTCGCAGTTTCACTGTATAG 444 |||||||||||||||| |||||| || Sbjct 138290 GAGCCATTCGCAGTTTTACTGTACAG 138265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508942222336