Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_
202014-11-13] 96,516 sequences; 1,011,849,000 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq82826 91.5 1e-13
seq4859 89.7 4e-13
seq8880 87.8 1e-12
seq4461 86.0 5e-12
>seq82826
Length=583
Score = 91.5 bits (100), Expect = 1e-13
Identities = 98/127 (77%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552
|| |||| || || | || ||||| | || ||| ||| || |||||||| ||||| |
Sbjct 139 TGGTGGCGTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCT 198
Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGC 61611
|| |||||||||| || || |||||||| |||||||||||||| ||| | || | || |
Sbjct 199 GGCTGAAGAAACGCGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCA-GA 257
Query 61612 GACGAGG 61618
|||||||
Sbjct 258 GACGAGG 264
>seq4859
Length=382710
Score = 89.7 bits (98), Expect = 4e-13
Identities = 92/119 (77%), Gaps = 1/119 (1%)
Strand=Plus/Plus
Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086
||||| || | || |||||||| | || || || |||| |||||| ||||| ||||
Sbjct 364078 GAACCTCTTCTCCAGGAGAATCCCAGGCGGTTTGTCGTGTTTCCCATCCAGTATCCGGAT 364137
Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTT 61145
|| ||| ||||||||| |||| | || || ||||||||||||||||||||| ||||
Sbjct 364138 ATCTGGAAGATGTACAAACAGGCACAGGCCTCTTTCTGGACGGTGGAGGAGGTC-ATTT 364195
>seq8880
Length=69162
Score = 87.8 bits (96), Expect = 1e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109
||||| || || ||||| ||||||||||| ||| | |||||||||| ||| || ||
Sbjct 10898 GTATATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGG 10957
Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTC 66162
|| |||| | ||||| || |||||||| | |||||| ||||| || |||||
Sbjct 10958 TTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTACCTGTCTC 11010
>seq4461
Length=101207
Score = 86.0 bits (94), Expect = 5e-12
Identities = 393/619 (63%), Gaps = 32/619 (5%)
Strand=Plus/Minus
Query 65702 GCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTA 65761
|| |||| ||||||| ||| || ||||| | || || |||||||| ||| | ||
Sbjct 14402 GCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATTGTCTCGAAGATGTGAATGTTG 14343
Query 65762 AGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGA 65821
|| | || || ||| ||| |||| || |||||||| || | ||| |||| |
Sbjct 14342 AGCAGTTGAGCTTCGGGGCTTTCGAACGGATAACGCATCAGGATGAAGGCGTCTGCCAAA 14283
Query 65822 CCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTC-GCCTCAGGTAC 65880
|| || |||||||| |||||||| || || ||| ||||| | |||| || || |||||
Sbjct 14282 CCCTGGACTCCAATCCCGATGGGCCGGTGGCGCTTGTTGGACC-TCTCTGCTTCGGGTAC 14224
Query 65881 AGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTC-ACCACATGCACGATAC 65939
|||||||| ||||| || || || |||| || | | | | ||| | || |
Sbjct 14223 GGGGTAGTAGTTGATCTCAATGATCTTGTTCAGGTT-CTTCACGATCACCTTGGTGAC-C 14166
Query 65940 GTCGCAA--TTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAA 65997
| || | || || || |||||| | || || || ||| || |||
Sbjct 14165 GAGGCCAGCTTCTTA-AAGTCAAAA------GTCCGCTCAGGCGTGACGTACATG----- 14118
Query 65998 CTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTC 66057
||| ||||| | || || ||||| ||||| || | |||||| ||| |||||
Sbjct 14117 -TTG---AGGGCGATGGAGGCCAGGTTACAGACCGCCACCTCGTCCTTGCTGGTGTACTC 14062
Query 66058 GACAATTTCGGTGCACAGATTA-----CTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112
|| ||||| ||||| |||| ||||| || ||
Sbjct 14061 CACNNNNNNNNNNNNNNNNNNNNNNNGCTGCACTTGATGGTACCCAGGTTCTGCTGGTTG 14002
Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172
||||| | |||||| || || ||||| | |||||| || || ||||| || || |||
Sbjct 14001 CTCTTCCTATTGCAGGCGTCTTTGTAGAGCATGTAGGGCGTCCCGGTTTCCGTCTGAGAC 13942
Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTAC--CGCCCTACCTTTGC 66230
|| |||||||||| ||||| | ||||||||| || | | | |||| ||||
Sbjct 13941 TCGATGATGGCGTACCAAACCTGCTGAGCCTTCACC--ACCTTCTTCACCCTCCCTTCCT 13884
Query 66231 GTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGAC 66290
||| || | |||||| | || || || ||||| ||| ||| | ||||
Sbjct 13883 TTTCATATTTAGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGAC 13824
Query 66291 ACTTGTGTGGACACATCAG 66309
||| || |||||||||||
Sbjct 13823 ACTCGTTGGGACACATCAG 13805
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397100345234240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |