Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20nevadensis_20pectoralis_20[genbank_20GCA_5F000776015.1_ 202014-11-13] 96,516 sequences; 1,011,849,000 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq82826 91.5 1e-13 seq4859 89.7 4e-13 seq8880 87.8 1e-12 seq4461 86.0 5e-12 >seq82826 Length=583 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || |||| || || | || ||||| | || ||| ||| || |||||||| ||||| | Sbjct 139 TGGTGGCGTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCT 198 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGC 61611 || |||||||||| || || |||||||| |||||||||||||| ||| | || | || | Sbjct 199 GGCTGAAGAAACGCGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCA-GA 257 Query 61612 GACGAGG 61618 ||||||| Sbjct 258 GACGAGG 264 >seq4859 Length=382710 Score = 89.7 bits (98), Expect = 4e-13 Identities = 92/119 (77%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || | || |||||||| | || || || |||| |||||| ||||| |||| Sbjct 364078 GAACCTCTTCTCCAGGAGAATCCCAGGCGGTTTGTCGTGTTTCCCATCCAGTATCCGGAT 364137 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTT 61145 || ||| ||||||||| |||| | || || ||||||||||||||||||||| |||| Sbjct 364138 ATCTGGAAGATGTACAAACAGGCACAGGCCTCTTTCTGGACGGTGGAGGAGGTC-ATTT 364195 >seq8880 Length=69162 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 ||||| || || ||||| ||||||||||| ||| | |||||||||| ||| || || Sbjct 10898 GTATATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGG 10957 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTC 66162 || |||| | ||||| || |||||||| | |||||| ||||| || ||||| Sbjct 10958 TTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTACCTGTCTC 11010 >seq4461 Length=101207 Score = 86.0 bits (94), Expect = 5e-12 Identities = 393/619 (63%), Gaps = 32/619 (5%) Strand=Plus/Minus Query 65702 GCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTA 65761 || |||| ||||||| ||| || ||||| | || || |||||||| ||| | || Sbjct 14402 GCCAGTTCGCAGCTGGCCTCCAGGGCGGCGTAGTAGATTGTCTCGAAGATGTGAATGTTG 14343 Query 65762 AGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGA 65821 || | || || ||| ||| |||| || |||||||| || | ||| |||| | Sbjct 14342 AGCAGTTGAGCTTCGGGGCTTTCGAACGGATAACGCATCAGGATGAAGGCGTCTGCCAAA 14283 Query 65822 CCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTC-GCCTCAGGTAC 65880 || || |||||||| |||||||| || || ||| ||||| | |||| || || ||||| Sbjct 14282 CCCTGGACTCCAATCCCGATGGGCCGGTGGCGCTTGTTGGACC-TCTCTGCTTCGGGTAC 14224 Query 65881 AGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTC-ACCACATGCACGATAC 65939 |||||||| ||||| || || || |||| || | | | | ||| | || | Sbjct 14223 GGGGTAGTAGTTGATCTCAATGATCTTGTTCAGGTT-CTTCACGATCACCTTGGTGAC-C 14166 Query 65940 GTCGCAA--TTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAA 65997 | || | || || || |||||| | || || || ||| || ||| Sbjct 14165 GAGGCCAGCTTCTTA-AAGTCAAAA------GTCCGCTCAGGCGTGACGTACATG----- 14118 Query 65998 CTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTC 66057 ||| ||||| | || || ||||| ||||| || | |||||| ||| ||||| Sbjct 14117 -TTG---AGGGCGATGGAGGCCAGGTTACAGACCGCCACCTCGTCCTTGCTGGTGTACTC 14062 Query 66058 GACAATTTCGGTGCACAGATTA-----CTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 || ||||| ||||| |||| ||||| || || Sbjct 14061 CACNNNNNNNNNNNNNNNNNNNNNNNGCTGCACTTGATGGTACCCAGGTTCTGCTGGTTG 14002 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 ||||| | |||||| || || ||||| | |||||| || || ||||| || || ||| Sbjct 14001 CTCTTCCTATTGCAGGCGTCTTTGTAGAGCATGTAGGGCGTCCCGGTTTCCGTCTGAGAC 13942 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTAC--CGCCCTACCTTTGC 66230 || |||||||||| ||||| | ||||||||| || | | | |||| |||| Sbjct 13941 TCGATGATGGCGTACCAAACCTGCTGAGCCTTCACC--ACCTTCTTCACCCTCCCTTCCT 13884 Query 66231 GTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGAC 66290 ||| || | |||||| | || || || ||||| ||| ||| | |||| Sbjct 13883 TTTCATATTTAGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGAC 13824 Query 66291 ACTTGTGTGGACACATCAG 66309 ||| || ||||||||||| Sbjct 13823 ACTCGTTGGGACACATCAG 13805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397100345234240