Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1869 176 7e-42 seq1167 138 2e-30 seq48 123 4e-26 seq39 98.7 1e-18 >seq1869 Length=76927 Score = 176 bits (194), Expect = 7e-42 Identities = 181/229 (79%), Gaps = 12/229 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||| ||||| |||||| |||||||| |||||| | Sbjct 70970 GTACAAAGGGCAGGGACGTAATCAACGTAAGCTT-ATGACTTACGCTTACTGGGAATT-C 71027 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAA---TTTCAAAGA 117 || || ||| ||||||||||| |||||| | || | |||| |||||| | Sbjct 71028 CTGATTCAAGTGGAACAATTGCAAGCCACTATCCTTA--ACCACGAAAGGGTTTCAACGG 71085 Query 118 -TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||||||| |||| |||| || || |||| || ||| |||||||||||||||| Sbjct 71086 GTTACCCGAACCTCTCGGTCAGGGA---AGACACGCTGATCCTTTCAGTGTAGCGCGCGT 71142 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || ||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 71143 GCAGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 71190 >seq1167 Length=233523 Score = 138 bits (152), Expect = 2e-30 Identities = 170/228 (75%), Gaps = 11/228 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| | || ||||| || |||| |||| | ||||||| ||| | Sbjct 14743 GTACAAAGGGCAGGGACTAAATCCGCGCGAT-TTAATGAATCGCACGTACTAGGGATT-C 14686 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||| || | ||| | ||| ||| || |||||||||||| || || ||||||| Sbjct 14685 CTCTTTCATGACGTA--ATTACAAACGTCAATCCCCATCACGGCGACGATTATAAGATTA 14628 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| | || ||| || | |||||||| | || |||||||||||||| | Sbjct 14627 CCCAAATCTTTCGATTCAG-----ACACTCGTTGTCGTCGCCATTGTAGCGCGCGTGCAG 14573 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||| || || |||||| Sbjct 14572 CCCAGAACATCTAAGGGCATCACAGACCTGTTATAGC--CACACTTCC 14527 >seq48 Length=2014874 Score = 123 bits (136), Expect = 4e-26 Identities = 151/198 (76%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 30 AGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATC 89 ||||| ||||| | ||||||| |||||| ||||||| | | || ||||||||| | Sbjct 1208461 AGCTT-ATGACCCATGCTTACTCGGAATT-CCTCGTTCATGGGAAATAATTGCAATCCCC 1208518 Query 90 TATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGAC 148 ||||| ||||||| |||| | ||||||| ||| ||||| |||| | | || Sbjct 1208519 AATCCCTATCACGAGTGGGGTTCAGCGGGTTACCCGCTCCTCTCGGCGAAGGGTAGACAC 1208578 Query 149 TCGTTGAATACA-TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 207 || ||| | || ||||||| | |||||||| |||| | ||||||||||||||||||||| Sbjct 1208579 ACGCTGA-TCCACTCAGTGTGGTGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGAC 1208637 Query 208 CTGTTATTGCCTCAAACT 225 ||||||||| ||||| || Sbjct 1208638 CTGTTATTG-CTCAATCT 1208654 >seq39 Length=2145532 Score = 98.7 bits (108), Expect = 1e-18 Identities = 161/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 12 AGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGA 71 |||||| || |||||| ||||| |||| | |||||||| |||| |||||| || | | Sbjct 989489 AGGGACTTAATCAACGTCAGCTT-ATGAACCACGCTTACT-GGAAATTCCTCTTTAATGG 989432 Query 72 CCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATTACCCGGACCTG 130 || ||||||||| | ||| || ||| |||| || |||||| ||| Sbjct 989431 GAAATAATTGCAATCCCTAAGCCCAATTGCGAGTGGGGTTCAGCAGGTTACCCATGCCTC 989372 Query 131 TCGGCCAAGGTGATAGACTCGTTGAA-TACATCAGTGTAGCGCGCGTGCGGCCCAGAACA 189 |||| |||| | | || | ||| ||| ||||||| | || | ||| |||| | ||| Sbjct 989371 TCGGAGAAGGGTAGACACACACTGATCTAC-TCAGTGTGGTGCACATGCAGCCCTGGACA 989313 Query 190 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||||||||||||||||||||||||| | ||||| ||| ||||| Sbjct 989312 TCTAAGGGCATCACAGACCTGTTATCG-CTCAATCTTGAGTGGC 989270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751932548185