Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq331 86.0 3e-15 seq73 73.4 2e-11 >seq331 Length=893294 Score = 86.0 bits (94), Expect = 3e-15 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| | | | |||| ||| |||| |||| |||| Sbjct 788252 GAACCCAAAGACTTTGGTTTCCTGGATGCTGCCCGGCGGGTCATGGGAATAATGCCGCCG 788193 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||| ||||| ||||| ||| ||||||| |||||||||| |||||||| Sbjct 788192 GATCGCTAGTTGGCATTGTTTATGGTCGGAACTACGATGGTATCTGATTGTCTTCGA 788136 >seq73 Length=1775624 Score = 73.4 bits (80), Expect = 2e-11 Identities = 88/118 (75%), Gaps = 4/118 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| | | | |||| | | |||| |||||| | Sbjct 181510 GAACCCAAAGACTTTGGTTTCCTGGATGCTGCCCGGTGGGTCATGGGCATAACA---CAT 181454 Query 61 G-ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||| |||| ||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 181453 GTATCGGTAGTTGGCATCGTTTATAGTTGGAACTACGACGGTATCTGATCGTCTTCGA 181396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278375834010