Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1869 244 2e-62 seq130 122 2e-25 >seq1869 Length=76927 Score = 244 bits (270), Expect = 2e-62 Identities = 231/288 (80%), Gaps = 15/288 (5%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGA----GCCAGGACTTTTACTTTGAAAAAATTAGAGT 95 |||| |||||||||||| | |||| | | || |||||||||||||||||||||| Sbjct 71897 TGCCTTTCACTGGGTGT-CTTGGGATACTGTCGGG---TTTACTTTGAAAAAATTAGAGT 71842 Query 96 GTTCAAAGCAGGCCTTT----GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTG 151 | ||||||||||| || ||| ||||| ||||||||||||| ||||||| || Sbjct 71841 GCTCAAAGCAGGCTGTTAAAAGCTTGAATATTCGTGCATGGAATAATAAAATAGGAAGT- 71783 Query 152 CGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGTCGGGGGT 210 || ||||||||||||||||| | | | || | |||||||||||||||| ||||||||| Sbjct 71782 CGTTTCTATTTTGTTGGTTTTTGGAAATCGACTTAATGATTAATAGGGACAGTCGGGGGC 71723 Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAA 270 | |||||||| | ||||||||||||||||||| |||||||||||||||||||| Sbjct 71722 ATTAGTATTCAGACGACAGAGGTGAAATTCTTGGACCGTCTGAAGACTAACTACTGCGAA 71663 Query 271 AGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| || ||||| |||||||||||||||| ||||||||||||| || Sbjct 71662 AGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 71616 >seq130 Length=1449536 Score = 122 bits (134), Expect = 2e-25 Identities = 175/242 (72%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT--TTGCTCGAATACATTAGCATG 131 ||||||||||||| |||| ||||||||||||| | || | |||||| ||| | Sbjct 606173 TTTACTTTGAAAAGATTAT--TGTTCAAAGCAGGTCCGGTTCCCTGAATACCGCAGCTAG 606230 Query 132 GAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 ||||||| ||||||||| | | ||| |||||||| |||| | | || | | |||||| Sbjct 606231 GAATAATGGAATAGGAC-TCCAGTTTTATTTTGTGGGTTCTTGGAACTGGGGCCATGATT 606289 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 || ||| | | ||||| | ||||| | |||||||||||||||||| | Sbjct 606290 AAGAGGAACGGCTGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCAGCT 606349 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 ||||| || | |||||| | || ||||| |||||||||||||||| ||||| ||| Sbjct 606350 CAAGACGGACGAAAGCGAAACCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGCAAG 606408 Query 312 TT 313 || Sbjct 606409 TT 606410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915115261632