Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1869 167 1e-38 seq1167 147 9e-33 seq2201 113 2e-22 seq154 109 2e-21 seq523 96.9 1e-17 seq573 93.3 2e-16 >seq1869 Length=76927 Score = 167 bits (184), Expect = 1e-38 Identities = 214/291 (74%), Gaps = 12/291 (4%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCA- 463 || ||||||||| |||||||||||||||||||||||| ||||| ||| |||||||| | Sbjct 69060 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATGCAAGTCATTGGGTGTAAC 69001 Query 464 --AACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACC---CGTGAGGGTG-CACCA 517 |||| ||| | |||||| || | ||| || || | | ||| | | | | Sbjct 69000 TAAACCTAAAGGCGAAGTGAAAGCAAATGTAGGAATGATCCTTTCTTTTGGGAGGCGCAA 68941 Query 518 T--CGACCGATCCTGATGTCTTCGGAT---GGATTTGAGTAAGAGCATAGCTGTTGGGAC 572 | |||| | | | | ||| | | | |||||||||||| |||||||| Sbjct 68940 TTCCGACTCTTTGCGTAGACCTCGTTTCTCGCAGAGAAGTAAGAGCATACACGTTGGGAC 68881 Query 573 CCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT 632 |||||||||||||||||||||||| ||| ||||| ||| |||||| ||| |||||| Sbjct 68880 CCGAAAGATGGTGAACTATGCCTGGCCAGGTTGAAGTCAGGGGAAACCCTGATGGAGGAC 68821 Query 633 CGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || |||| ||||| ||||||||||||||||| | ||||||||||||||| Sbjct 68820 CGTAGCGATTCTGACGTGCAAATCGATCGTCGGAGCTGGGTATAGGGGCGA 68770 Score = 116 bits (128), Expect = 2e-23 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||||| || ||| | ||||| || || || ||||||| | || ||| ||||||| Sbjct 69559 GAGTCGAGCTGCTTGAAAGTGCAGTTCAAAGTGTGAGGTAAGCTCCTCATAAGGCTAAAT 69500 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || || |||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 69499 ATCACCCCGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 69440 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGT 186 |||||||| || || |||||||| ||| Sbjct 69439 AGAGAGTTCAAGAGTACGTGAAACTGT 69413 >seq1167 Length=233523 Score = 147 bits (162), Expect = 9e-33 Identities = 132/162 (81%), Gaps = 3/162 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| |||||||||||||||| |||||| |||| |||||| | | |||||||||||| Sbjct 15865 GAGTCGGATTGTTTGGGAATGCAG-TCTAAAGTGGGTGGTAAACTCCATCTAAAGCTAAA 15923 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 |||| | ||||||||||||| ||||||| | || ||||| ||||||||||| || | Sbjct 15924 TATTACCTCGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGTTGAAAAGCACTCTGAA 15983 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGC 200 |||| || | ||||| |||||||| ||| | ||||||||| Sbjct 15984 AAGAAAG-TGAAAAGTACGTGAAACCGTTAATGGGGAAGCGC 16024 Score = 111 bits (122), Expect = 7e-22 Identities = 209/301 (69%), Gaps = 21/301 (7%) Strand=Plus/Plus Query 398 TTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGG 457 ||||| || ||||||||| |||||||||||||||| ||||| | || |||||| | Sbjct 16366 TTGTA--CGACCCGTCTTGAAACACGGACCAAGGAGGCTAACGTATACGCGAGTCGAGGA 16423 Query 458 GTGTC-AAACCCGTGCGCGTAATGAAAGTGAACG------GAGGTGGGAACCCGTGAGGG 510 ||| |||| | || |||||||||||||||| || ||| ||| | | | Sbjct 16424 GTGGAGAAACTCTTGGGCGTAATGAAAGTGAAACTTGTGAGATCTGGCAACGATTAAATG 16483 Query 511 T-------GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGC 563 | ||| || ||||| | || | || | || |||||| ||| || Sbjct 16484 TTGTCAGCGCATCACAGACCGGT--TGTAGGGTT-GCCTGCGATTGAGTTT-AGCGTATG 16539 Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 | | |||||||||||||||||| |||||||||| ||||| ||| | || | | Sbjct 16540 CGATAGGACCCGAAAGATGGTGATCTATGCCTGAGTAGGGCGAATTCGTTTTAACCAACG 16599 Query 624 GTGGAGGCTCGCA-GCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 ||||||| || | |||||||| ||||||||| |||||| || ||||||||||||||| Sbjct 16600 ATGGAGGCCCGTAAGCGGTTCTAACGTGCAAATTGATCGTTTAACTTGGGTATAGGGGCG 16659 Query 683 A 683 | Sbjct 16660 A 16660 >seq2201 Length=42710 Score = 113 bits (124), Expect = 2e-22 Identities = 94/114 (82%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG-AGGAAACTCTGGTGG 627 |||||||||||||||||||||||||||| |||| ||||| || | |||||||||||| Sbjct 10893 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCTAGGATAAAACTCTGGTGG 10834 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||| || |||||| ||| | |||||| || ||||| | |||||| |||||| Sbjct 10833 AGGCCCGTAGCGGTCCTGACATGCAAAACGGTCGTCCGACCTGGGTAGAGGGGC 10780 >seq154 Length=1352349 Score = 109 bits (120), Expect = 2e-21 Identities = 96/117 (82%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG-GAAACTCTGGTGG 627 |||||||||||| ||||||||||||||| ||| |||||||| | |||||||||||| Sbjct 12793 GGACCCGAAAGACGGTGAACTATGCCTGGGCGGGGCGAAGCCAGGGTAAAACTCTGGTGG 12734 Query 628 AGGCTCGCAGCGGT-TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| | |||||| ||| |||||||| || ||||| || ||| ||||||||||| Sbjct 12733 AGGCCTGTAGCGGTACCTGACGTGCAAAACGGTCGTCCAACCTGGTTATAGGGGCGA 12677 >seq523 Length=616072 Score = 96.9 bits (106), Expect = 1e-17 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| |||||||||||||||||| | | || |||||| | | ||||| || |||| Sbjct 60432 GAGTCCGGTTGTTTGGGAATGCAGCCCAGAGCAGGTGGTAAACTCCATCTAAGGCGAAAT 60491 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| | ||||| || | ||||| ||||||| |||||| | Sbjct 60492 ACCGGCACGAGACCGATAGTAGATAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 60551 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 || ||||| || || ||||||| Sbjct 60552 AGTGAGTTCAAGAGGGCGTGAAA 60574 >seq573 Length=572200 Score = 93.3 bits (102), Expect = 2e-16 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 || || |||| |||||||| |||||||| |||| |||||| ||||||||||||||| Sbjct 16807 GGTCCTGAAACATGGTGAAATATGCCTGGGCAGGGCAAAGCCAAGGGAAACTCTGGTGGA 16866 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 ||| | |||||| ||| |||| ||||| || ||| || ||||| |||| Sbjct 16867 TGCTTGTAGCGGTCCTGACGTGAAAATCAATTGTCCAACCTGGGTGAAGGG 16917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079801394450