Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1869 260 2e-67 seq39 205 1e-50 seq1167 147 3e-33 seq684 109 9e-22 seq181 82.4 1e-13 seq48 82.4 1e-13 >seq1869 Length=76927 Score = 260 bits (288), Expect = 2e-67 Identities = 209/248 (84%), Gaps = 7/248 (3%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 71127 TCAGTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC-TC 71185 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC-CACC----AACCAT 130 || || | | ||| || || | ||||||||||||||| |||| || | Sbjct 71186 AATCT-CGTGTAGCTAGACGCTACCAGTCCCTCTAAGAAGAATTTTCACCGTAAAAAAAA 71244 Query 131 AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | ||||| |||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 71245 TGACGATGAAACTATTTAGCAGGACAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAA 71304 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| || Sbjct 71305 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCGAGAAAGAGCTCTC 71364 Query 251 AATCTGTC 258 |||||||| Sbjct 71365 AATCTGTC 71372 >seq39 Length=2145532 Score = 205 bits (226), Expect = 1e-50 Identities = 195/246 (79%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| | || | ||| |||| | |||||||||||||||||||||||||||| || || Sbjct 989341 TCAGTGTGGTGCACATGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATCGC-TC 989283 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 || ||| | |||||| | |||| | ||||| |||||||| |||| || | | | Sbjct 989282 AATCTTG-AGTGGCTGAACGCCACTTGTCCCGCTAAGAAGTTGTACACCGACTGCACTGG 989224 Query 136 ATGGGGCTATT---TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | | || | ||||| | |||||||||||||||| ||||||||||||||||| Sbjct 989223 GCTGCGTTACTAGCTAGCAAGCCTGAGTCTCGTTCGTTATCGAAATTAACCAGACAAATC 989164 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 |||||||||||||| |||| |||||||||||||| | ||||| |||||||||||||||| Sbjct 989163 ACTCCACCAACTAAAAACGACCATGCACCACCACAAACAGAATTAAGAAAGAGCTATCAA 989104 Query 253 TCTGTC 258 |||||| Sbjct 989103 TCTGTC 989098 >seq1167 Length=233523 Score = 147 bits (162), Expect = 3e-33 Identities = 92/99 (93%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||||| ||||| ||||||||||| ||||||||||| ||| ||||||||||||||||||| Sbjct 14286 TCTCGTCCGTTACCGGAATTAACCTGACAAATCACTTCACGAACTAAGAACGGCCATGCA 14227 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||| |||||| ||||||||||||||||||||| Sbjct 14226 CCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 14188 Score = 96.9 bits (106), Expect = 6e-18 Identities = 71/82 (87%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | || || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 14606 ACTCGTTGTCGTCGCCATTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACAGA 14547 Query 62 CCTGTTATTGCCTCAAACTTCC 83 |||||||| || || |||||| Sbjct 14546 CCTGTTATAGC--CACACTTCC 14527 >seq684 Length=465477 Score = 109 bits (120), Expect = 9e-22 Identities = 174/245 (71%), Gaps = 10/245 (4%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 |||||| | || ||| |||| | | ||||| |||| ||||||||||||||| | Sbjct 293274 CAGTGTGGTGCTTGTGTAGCCCCGGAGATCTAGAGGCA---CAGACCTGTTATTGCTGTA 293218 Query 77 AACTTCCAT-TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC--CATAGT 133 || ||| |||||| | ||| | || ||||||||||| | || || || Sbjct 293217 ---TTTCATGTGGCTGAACACCACTTGTACCTCTAAGAAGTTGTACCTTAATTGCACAGG 293161 Query 134 -CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATC 192 | | ||| |||||| | | || || | || ||||||| |||||||| |||| Sbjct 293160 GCCGCGTAACTACTTAGCATGCAGACGTGTCATCGGTAATCGGAAATAACCAGATTAATC 293101 Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 || |||||||| |||||||| ||||||||||||||| |||||| |||||||| | | || Sbjct 293100 CCTTCACCAACTGAGAACGGCTATGCACCACCACCCACAGAATCCAGAAAGAGATTTTAA 293041 Query 253 TCTGT 257 ||||| Sbjct 293040 TCTGT 293036 >seq181 Length=1265841 Score = 82.4 bits (90), Expect = 1e-13 Identities = 78/99 (79%), Gaps = 7/99 (7%) Strand=Plus/Plus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||| || ||||| ||||||||| |||||| | ||||||||| ||||||| |||||| Sbjct 819448 TCTCATTTGTTATTGGAATTAACTAGACAATTTGCTCCACCAATTAAGAACAGCCATG-- 819505 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||| | |||||| || || ||||||||||| Sbjct 819506 -CACCACCTACAGAATC----AATAGTCATCAATCTGTC 819539 >seq48 Length=2014874 Score = 82.4 bits (90), Expect = 1e-13 Identities = 58/65 (89%), Gaps = 1/65 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| | |||||||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 1208591 TCAGTGTGGTGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 1208649 Query 76 AAACT 80 || || Sbjct 1208650 AATCT 1208654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796728529779