Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq1869 91.5 9e-17 seq2367 82.4 5e-14 >seq1869 Length=76927 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 70930 CTCACTAAAACATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 70987 Query 109 TAATACAACGCAAGCT 124 |||| ||||| ||||| Sbjct 70988 TAAT-CAACGTAAGCT 71002 >seq2367 Length=31386 Score = 82.4 bits (90), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 3/71 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 26560 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 26503 Query 109 TAATACAACGC 119 |||| |||||| Sbjct 26502 TAAT-CAACGC 26493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300773889620