Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1869 176 9e-42 seq1167 140 6e-31 seq48 125 1e-26 seq39 107 4e-21 >seq1869 Length=76927 Score = 176 bits (194), Expect = 9e-42 Identities = 199/259 (77%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||||||||| || || ||| || | ||||| |||||||||||||||| Sbjct 71224 CTTCTTAGAGGGACTGGTAGCGTCTAGCTACACGA-GATTGAG-CAATAACAGGTCTGTG 71167 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||||||||||||| |||||||||||||||||| || || || | || | Sbjct 71166 ATGCCCTTAGATGTTCTGGGCTGCACGCGCGCTACACTGAAAGGATCAGCGTG-TCTT-- 71110 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGT-GCTGGGGATAGAGCATT 249 || || ||| |||| |||||| | | |||| || |||| | | |||||| | || Sbjct 71109 CCCTGACCGAGAGGTTCGGGTAACCCGTTGAAACCCTTTCGTGGTTAAGGATAGTGGCTT 71050 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 |||||| || | ||| || |||||| || |||||||| ||||| ||| ||||||| Sbjct 71049 GCAATTGTTCCACTTGAATCAGGAATTCCCAGTAAGCGTAAGTCATAAGCTTACGTTGAT 70990 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 70989 TACGTCCCTGCCCTTTGTA 70971 >seq1167 Length=233523 Score = 140 bits (154), Expect = 6e-31 Identities = 174/234 (74%), Gaps = 11/234 (5%) Strand=Plus/Plus Query 95 AAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGC 154 || |||| |||||| || || ||||||||||||||||||||||||||||||||||| || Sbjct 14520 AATCCGA-GGAAGTGTG--GCTATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCTGC 14576 Query 155 ACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAAT 214 |||||||||||| || | | |||||||| || || ||| | |||||||| Sbjct 14577 ACGCGCGCTACAATGGCGACGACAACGAGT-----GTCTGAATCGAAAGATTTGGGTAAT 14631 Query 215 CTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAA 274 ||| ||| | | |||| ||||||| || ||| ||||| || | || |||||| Sbjct 14632 CTT-ATAATCGTCGCCGTGATGGGGATTGACGTTTGTAATTA--CGTCATGAAAGAGGAA 14688 Query 275 TGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||| | ||| |||| | |||| |||| |||||||||||||||| Sbjct 14689 TCCCTAGTACGTGCGATTCATTAAATCGCGCGGATTTAGTCCCTGCCCTTTGTA 14742 >seq48 Length=2014874 Score = 125 bits (138), Expect = 1e-26 Identities = 145/194 (75%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| |||||||| | || Sbjct 1208654 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCACCAC 1208596 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 ||||| | || || || | |||| |||| ||| |||||| | | || | Sbjct 1208595 ACTGAGTGGATCAGCGTGTGTCTACCCTTCGCCGAGAGGAGCGGGTAACCCGCTGAACCC 1208536 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||| | ||||| | | |||||||||||| | | | |||||||||| || |||||| Sbjct 1208535 CACTCGTGATAGGGATTGGGGATTGCAATTATTTCCCATGAACGAGGAATTCCGAGTAAG 1208476 Query 286 CGCGTGTCATCAGC 299 | | ||||| ||| Sbjct 1208475 CATGGGTCATAAGC 1208462 >seq39 Length=2145532 Score = 107 bits (118), Expect = 4e-21 Identities = 177/249 (71%), Gaps = 5/249 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||| ||||| | ||| | |||| | ||| ||||| | |||||||||||||| Sbjct 989244 CTTCTTAGCGGGACAAGTGGCGTTCAGCCACTC-AAGATTGAG-CGATAACAGGTCTGTG 989301 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGA-CAGAGCCAACGAGTTCATC 189 |||||||||||||| | |||| ||| | || | ||||||| ||| || | || | Sbjct 989302 ATGCCCTTAGATGTCCAGGGCTGCATGTGCACCACACTGAGTAGA-TCAGTGTGTGTCTA 989360 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 |||| ||| ||| ||||||| || | || | | ||| | ||| | | ||| Sbjct 989361 CCCTTCTCCGAGAGGCATGGGTAACCTGCTGAACCCCACTCGCAATTGGGCTTAGGGATT 989420 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | || ||||||| | |||||||| | |||| ||| ||||||| Sbjct 989421 GCAATTATTTCCCATTAAAGAGGAATTTCCAGTAAGCGTGGTTCATAAGCTGACGTTGAT 989480 Query 310 TACGTCCCT 318 || |||||| Sbjct 989481 TAAGTCCCT 989489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947112298752