Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq413 104 4e-20 seq154 104 4e-20 seq1869 96.9 6e-18 seq4189 95.1 2e-17 seq1303 95.1 2e-17 seq2201 82.4 1e-13 seq3385 77.0 5e-12 >seq413 Length=776527 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 769290 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 769233 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 769232 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 769179 >seq154 Length=1352349 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 9034 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCATGGCTGAGGAGCCAAT 8977 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | || ||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 8976 GAGGCAAAGCTACCATCTGTTGGATTATGACTGAACGCCTCTAAGTCAGAATCC 8923 >seq1869 Length=76927 Score = 96.9 bits (106), Expect = 6e-18 Identities = 96/122 (79%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | ||| || | ||||| || || |||| ||| |||| Sbjct 66558 GTACGAGAGGAACAGCAGG-TTCGGAC-ATTTGGTACATGTACTTGACTGATCAGTCAGT 66501 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| | ||||||||| ||||||||||||||| |||||||||| | | Sbjct 66500 GGTGCGAAGCTACCATCCGTTGGATTATGCCTGAACGCCTCTAAGGCAGAATCCATTCTA 66441 Query 121 GA 122 || Sbjct 66440 GA 66439 >seq4189 Length=4709 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || |||||| || ||| | | || | || |||| || || | Sbjct 3469 GTACGAGAGGAACTGCACG-TTCAGA-TATTTGATGTATGTGCTTGGCTGAGGAGCCAAT 3526 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 3527 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 3580 >seq1303 Length=186690 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || |||||| || ||| | | || | || |||| || || | Sbjct 3223 GTACGAGAGGAACTGCACG-TTCAGA-TATTTGATGTATGTGCTTGGCTGAGGAGCCAAT 3280 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 3281 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 3334 >seq2201 Length=42710 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||| | || | |||||| | ||||| | || | || |||| || || | Sbjct 6694 GTAAGAGAGGACCTGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 6637 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| | ||| |||||||||||||||||| Sbjct 6636 GGGGCGAAGCTACCATCTGTGGGATTATGACAGAATGCCTCTAAGTCAGAATCC 6583 >seq3385 Length=7684 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||| | || | |||||| | ||||| | || | || |||| || || | Sbjct 5291 GTACGAGAGGACCTGCAGG-TTCAGAC-ATTTGGTGTATGTGCATGGCTGAGGAGCCAAT 5234 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | || || |||||||||| | |||||| ||||| |||||||||||||||||| Sbjct 5233 GGGGCAAATCTACCATCTGTGGTATTATGACTGAATGCCTCTAAGTCAGAATCC 5180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819126520576