Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1869 385 1e-104 seq1167 233 6e-59 seq130 201 3e-49 seq73 156 1e-35 seq1541 150 5e-34 seq48 149 2e-33 seq221 89.7 2e-15 >seq1869 Length=76927 Score = 385 bits (426), Expect = 1e-104 Identities = 401/512 (78%), Gaps = 13/512 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||| || || | || | | ||| || | || ||||| | ||||||||| Sbjct 72096 GTACTCATTCCGATAACCGGGCCTCGGATGAGTCCGGCTTCGTTATTTTTCGTCACTACC 72155 Query 60 TCCCCGTGTCGGG-ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 || | ||| ||||||||||||||| |||||||||||||||| || |||||||||| Sbjct 72156 TCGATCT-TCGATCATTGGGTAATTTGCGTGCCTGCTGCCTTCCTTAGAAGTGGTAGCCG 72214 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 |||||||||||||||||||||||||||||||| |||||||||||||||| | |||| | Sbjct 72215 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTCAAAACCACTG 72274 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 | ||| |||| | || |||| ||||||||||||| | || | ||| |||||||| Sbjct 72275 TGGGCGTCTATGCCACAGTCGACAGTTGATAGGGCACACCTTAGGCGGAAATATCGCCGG 72334 Query 239 CTCAAGGCCATGCGATTCGTTAA-GTTATTATGAATCACCAA--GGAGCCCCGAAGGGCG 295 | || ||||||||||| | || |||||| || ||||||| | | ||||| | || Sbjct 72335 CGTAAAGCCATGCGATTTGCAAATGTTATTCAGAGTCACCAATGGTACAGCCGAA-GCCG 72393 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCCG-AAG-TCGGG-GTTTTTAGCATGTATT 352 || | |||| ||||||||| || |||| || ||| ||||| ||||| ||||||||| Sbjct 72394 TTTGGTTTTGGTCTAATAAAAGCATCCCTCACGTAAGTTCGGGATTTTTTCGCATGTATT 72453 Query 353 AGCTCTAGAATTACCACGGTTATCCATGT-AGTAAGGTACTATCAAATAAACGATAACTG 411 ||||| ||||||||| | |||||||| || | | || | |||| | || | | || Sbjct 72454 AGCTCCAGAATTACCGCAGTTATCCAAGTAACTGAG--AATATCCAGTATATTAGGTGTG 72511 Query 412 ATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCT 471 |||||||||||||||||||||||||||||| || | | |||||| || ||||||||| Sbjct 72512 ATTTAATGAGCCATTCGCAGTTTCACTGTACAGTCCGTGTGTACTTACACTTGCATGGCT 72571 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCA 503 |||||||||||||||||||||||||||||||| Sbjct 72572 TAATCTTTGAGACAAGCATATGACTACTGGCA 72603 >seq1167 Length=233523 Score = 233 bits (258), Expect = 6e-59 Identities = 189/228 (83%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 51 GTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT 110 ||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 13277 GTCACCACCTCCCATTGTCTGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT 13218 Query 111 GGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGA 170 ||||||||||||||||||||||||||||| |||||||||| || | ||||||||||| Sbjct 13217 GGTAGCCGTTTCTCAGGCTCCCTCTCCGGGATCGAACCCTGATCCTCCGTTACCCGTAAC 13158 Query 171 TACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACC 230 | ||||| ||| || || ||| |||| ||| |||||||||||||| | | ||| Sbjct 13157 TCCCATGCTAGTACAATACACTAGCATC--AAGGTGATAGGGCAGAAACTCAATCGAAAT 13100 Query 231 ATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA 278 |||||||||||||||||| |||| | ||||||| || |||||| Sbjct 13099 GTCGCCGGCTCAAGGCCATACGATCAGCAAAGTTATCTAGATTCACCA 13052 >seq130 Length=1449536 Score = 201 bits (222), Expect = 3e-49 Identities = 148/171 (87%), Gaps = 1/171 (1%) Strand=Plus/Minus Query 68 TCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGG 127 || ||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 606168 TCTGGAGTGGATAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTTTCAGG 606109 Query 128 CTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACT 187 |||| |||||||||||||||||| |||||||||||||||| | |||||||||||| | Sbjct 606108 CTCCATCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGTCACCATGGTAGGCACGT 606049 Query 188 ATCCTACCATCGAAAGTTGATAGGGC-AGAAATTTGAATGAACCATCGCCG 237 | | ||||||| |||||||||| ||| ||| ||| ||| || | |||||| Sbjct 606048 AGCATACCATCAAAAGTTGATAAGGCAAGACATTCGAAAGAGACGTCGCCG 605998 >seq73 Length=1775624 Score = 156 bits (172), Expect = 1e-35 Identities = 126/150 (84%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGT--CACTA 57 ||| ||||| ||||||| | || | |||||| | ||||| ||||| || | || || Sbjct 181100 GTATTCATTAGAATTACAGGGCCTCGAAAGAGTCTTGTATTGTTATTTTTTTTTTCAATA 181041 Query 58 CCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 117 | |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 181040 CATCCCCGAGTCGGAAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCC 180981 Query 118 GTTTCTCAGGCTCCCTCTCCGGAATCGAAC 147 ||||||||||| ||||||| ||||| |||| Sbjct 180980 GTTTCTCAGGCACCCTCTCTGGAATTGAAC 180951 >seq1541 Length=132556 Score = 150 bits (166), Expect = 5e-34 Identities = 140/173 (81%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 112 GTAG-CCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGA 170 |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 99034 GTAGTCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTGGT 99093 Query 171 TACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACC 230 |||||| ||||| || | ||||||||||||||||||||||||| ||| ||| || | Sbjct 99094 CACCATGCTAGGCACGTAGCGTACCATCGAAAGTTGATAGGGCAGACATTCGAAAGAGAC 99153 Query 231 ATCGCCGGCTC--AAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAA 279 |||||| | | | ||||| ||||| | | | ||||| || ||||||| Sbjct 99154 GTCGCCGCCACGGAGGGCCA-GCGATCGGCTCGAGGTTATCTAGAGTCACCAA 99205 >seq48 Length=2014874 Score = 149 bits (164), Expect = 2e-33 Identities = 129/157 (82%), Gaps = 6/157 (4%) Strand=Plus/Minus Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA---CTATCAAATAAACGATA 407 |||||||||||||| |||| |||||||| ||| | ||| | |||||| ||| ||| Sbjct 65668 TTAGCTCTAGAATTGCCACAGTTATCCAAGTA--ACGGTGGAGCGATCAAAGGAACCATA 65611 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467 ||||||||||||| |||||||||||||||||| || | | |||||| | ||||| Sbjct 65610 ACTGATTTAATGAACCATTCGCAGTTTCACTGGGCAGTCCGTGTGTACTTACATTTGCAT 65551 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||| |||||||||| Sbjct 65550 GGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 65515 Score = 77.0 bits (84), Expect = 1e-11 Identities = 49/52 (94%), Gaps = 1/52 (2%) Strand=Plus/Plus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||| || ||||||||||||||||||||||||||||||| |||||||||| Sbjct 1209847 TACTTACACTTGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 1209897 >seq221 Length=1130822 Score = 89.7 bits (98), Expect = 2e-15 Identities = 85/107 (79%), Gaps = 5/107 (5%) Strand=Plus/Plus Query 82 TTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG-- 139 |||| | |||| |||||||| ||||| |||||||||||||||||| ||||||||| | Sbjct 513377 TTTGTGTGCCTCATGCCTTCCATGGATCTGGTAGCCGTTTCTCAGGTTCCCTCTCCAGAA 513436 Query 140 AATCGAACCC---TAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 || ||||| |||||||| ||||||| | |||||||||||| Sbjct 513437 AAAAAAACCCTTATAATTCCCTGTTACCCATGTTAACCATGGTAGGC 513483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510260152064