Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq656 248 7e-61 seq761 114 1e-20 seq258 114 1e-20 seq197 89.7 4e-13 >seq656 Length=490082 Score = 248 bits (274), Expect = 7e-61 Identities = 766/1168 (66%), Gaps = 39/1168 (3%) Strand=Plus/Minus Query 65416 GTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGT 65475 |||| |||||| || |||||||| ||||| || || | ||| ||||||||| || Sbjct 300667 GTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGT 300608 Query 65476 GATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGG 65535 | || || | ||| || ||||||| || || || || || || || || |||||||| Sbjct 300607 GTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGAGCGGTGGAGGCCGTGGGCATGGG 300548 Query 65536 AGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCA 65595 || | || || ||| | || |||| | | || || | || | ||| Sbjct 300547 GGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCA 300488 Query 65596 GTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGAT 65655 || |||||| || | | | | || | ||||| || | || ||| | || | Sbjct 300487 GTCCCACAT--GTCGGTGGGAGTCTTCTCC----CACATGTCGTACTGGAGGATGCCTTT 300434 Query 65656 ACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCT 65715 ||| | ||||| || | | | ||||| ||| ||| || |||| ||||| Sbjct 300433 GCTGACAGGTGAGCCTTCGTACGTCTCGTAAGGACCCAGCTCTGCCGCCAGTTCGCAGCT 300374 Query 65716 GGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTC 65775 || ||| || ||||| | || ||||||||||| ||| | || || | || || Sbjct 300373 GGCCTCCAGGGCGGCGTAGTAGATGGTCTCGAAGATGTGGATGTTGAGCAGTTGAGCTTC 300314 Query 65776 ATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAAT 65835 ||| ||| |||| || |||||||| || | ||| |||| ||| || ||||| || Sbjct 300313 TGGGCTTTCGAACGGGTAACGCATCAGGATGAAGGCGTCTGCCAAACCCTGGACTCCGAT 300254 Query 65836 ACCGATGGGACGATGACGCAAATTGGAACGTCTC-GCCTCAGGTACAGGGTAGTAATTGA 65894 |||||||| || || || ||||| | |||| || || ||||| |||||||| |||| Sbjct 300253 CCCGATGGGCCGGTGGCGTTTGTTGGACC-TCTCTGCTTCGGGTACGGGGTAGTAGTTGA 300195 Query 65895 TATCGATAATGCGATTCAAATTGCGTGTC-ACCACATGCACGATACGTCGCAA--TTGTT 65951 | || || || |||| || | | | | ||| | || || || | || || Sbjct 300194 TCTCAATGATCTTGTTCAGGTT-CTTCACGATCACCTTGGTGAC-CGAGGCCAGCTTCTT 300137 Query 65952 CGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAA 66011 || || ||| | || || || ||| || ||| ||| ||||| | Sbjct 300136 A-AAGTCGAAA------GTCCGCTCAGGCGTGACGTACATG------TTG---AGGGCGA 300093 Query 66012 GAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGC 66071 || || ||||| ||||| || | |||||| ||| ||||| || || || |||| Sbjct 300092 TGGAGGCCAGGTTACAGACCGCCACCTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGC 300033 Query 66072 ACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCAT 66131 | || || ||||| |||||||||| ||||| || || ||||| | ||||| || | Sbjct 300032 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 299973 Query 66132 CCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAA 66191 ||||||| | |||||| || || ||||| || || ||||| |||||||||| ||||| Sbjct 299972 CCTTGTAAAGCATGTAGGGCGTCCCGGTTTCCGTCTGAGACTCGATGATGGCGTACCAAA 299913 Query 66192 GAGCGCGTGCCTTCACCGTACGTAC--CGCCCTACCTTTGCGTTCGTAATGTTCGTAGAG 66249 | ||||||||| || | | | |||| |||| ||| || | |||||| Sbjct 299912 CCTGCTGAGCCTTCACC--ACCTTCTTCACCCTCCCTTCCTTTTCATATTTAGTGTAGAG 299855 Query 66250 GTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAG 66309 | || || || ||||| ||| ||| | ||||||| || ||||||||||| Sbjct 299854 CTTCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGACACTCGTTGGGACACATCAG 299795 Query 66310 CGACCAATCACCATCCTGTTCT--ACACGACGCATAAATAGATCAGGTATCCAGAGGGCG 66367 ||||| | || || ||| || | ||| || || ||||| ||||| | |||| Sbjct 299794 GGACCAGT--CCTGGTTGCTCTCCACTCTCTTCATGAACAGGTCAGGGATCCACATGGCG 299737 Query 66368 TAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAA 66426 ||||| || || | |||| |||||||| | || ||| || || || || ||||| Sbjct 299736 TAGAATAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGAA 299678 Query 66427 CTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCC 66486 || || | || ||||| || |||||||| |||||||| | ||| || ||| Sbjct 299677 GTCGAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCCGGTCGCTTGTT 299618 Query 66487 GCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCC 66546 |||||| ||||| || ||||| ||| |||||| | || |||| |||||| || ||||| Sbjct 299617 GCCACCCTGGTCAACATAGCGGGCGGTGTTGTTGTAAACCCGCAGCATCGGGACCAGCCC 299558 Query 66547 GTTAGATTTGCCATTGGTGCCGTCGATG 66574 || || ||||| || ||||| ||||| Sbjct 299557 ATTGGAGTTGCCGTTAGTGCCAGCGATG 299530 >seq761 Length=414005 Score = 114 bits (126), Expect = 1e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 ||||| || || ||||| ||||||||||| ||| | |||||||||| ||| || || Sbjct 275190 GTATATTCTACTATTTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGG 275249 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || |||| | ||||| || |||||||| | |||||| ||||| || ||||| || Sbjct 275250 TTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTACCCGTCTCTGTCTGC 275309 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACC 66225 |||||||||||||||| ||| || | ||||||||| ||| | ||||||| Sbjct 275310 GACTCAATGATGGCGTACCACAGTTGCTGGGCCTTCACCACACGCTTCACCCTACC 275365 >seq258 Length=1028905 Score = 114 bits (126), Expect = 1e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||||||||| ||| | ||||| | |||||||| || ||||||| Sbjct 692117 TGGAGCGCTTCACCCAGGAGGTGCAGGTGACAGAGGCCAGGTGTTTCTATGGTTTCCAGA 692176 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | || ||||| || ||||||| || Sbjct 692177 TCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTGCTGATCGACACCTACATCAAGG 692236 Query 61376 A 61376 | Sbjct 692237 A 692237 Score = 114 bits (126), Expect = 1e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||||||||| ||| | ||||| | |||||||| || ||||||| Sbjct 707114 TGGAGCGCTTCACCCAGGAGGTGCAGGTGACAGAGGCCAGGTGTTTCTATGGTTTCCAGA 707055 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | || ||||| || ||||||| || Sbjct 707054 TCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTGCTGATCGACACCTACATCAAGG 706995 Query 61376 A 61376 | Sbjct 706994 A 706994 Score = 96.9 bits (106), Expect = 3e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| ||||| || ||||| | ||||||||| |||| | || || |||| |||||| Sbjct 707621 GAGAACCCTCGGCGCTTCGTCATCTTCCCCATCCAGTACCACGACATCTGGCAGATGTAC 707562 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || |||||||| |||||||||||||||| |||||||| Sbjct 707561 AAGAAGGCGGAGGCTTCCTTCTGGACGGCCGAGGAGGT 707524 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || |||| || || | || ||||| | || ||| ||| || |||||||| ||||| | Sbjct 692510 TGGTGGCGTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCT 692569 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGC 61611 || |||||||||| || || |||||||| |||||||||||||| ||| | || | || | Sbjct 692570 GGCTGAAGAAACGCGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTCATCAGCA-GA 692628 Query 61612 GACGAGG 61618 ||||||| Sbjct 692629 GACGAGG 692635 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 ||||| ||||| || ||||| | |||||||| |||| | || || ||| |||||| Sbjct 691581 GAGAACCCTCGGCGCTTCGTCATCCTCCCCATCCAGTACCACGACATCTGGGAGATGTAC 691640 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || |||||||| |||||||||||||||| |||||||| Sbjct 691641 AAGAAGGCGGAGGCTTCCTTCTGGACGGCCGAGGAGGT 691678 Score = 87.8 bits (96), Expect = 1e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || |||| || || | || ||||| | || ||| ||| || |||||||| ||||| | Sbjct 706721 TGGTGGCGTTCGCCGCAGTGGAGGGAATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCT 706662 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGAT-ATCACGC 61611 || |||||||||| || || ||||| || |||||||||||||| ||| | || | || | Sbjct 706661 GGCTGAAGAAACGCGGCCTGATGCCTGGCCTGACCTTCAGCAACGAGCTCATCAGCA-GA 706603 Query 61612 GACGAGG 61618 ||||||| Sbjct 706602 GACGAGG 706596 >seq197 Length=1194064 Score = 89.7 bits (98), Expect = 4e-13 Identities = 83/104 (80%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 |||||||| | || || || ||||| |||||| ||||| |||||| ||| |||||| Sbjct 1107516 GAGAATCCCAGGCGGTTTGTCTTGTTTCCCATCCAGTATCCGGATATCTGGAAGATGTAC 1107575 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTT 61145 ||| |||| | || || ||||||||||||||||||||| |||| Sbjct 1107576 AAACAGGCACAGGCCTCTTTCTGGACGGTGGAGGAGGTC-ATTT 1107618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397523136811760