Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinodon_20variegatus_20[refseq_20GCF_5F000732505.1_202015-10-01] 9,259 sequences; 1,035,184,475 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq12 89.7 2e-12 >seq12 Length=2849033 Score = 89.7 bits (98), Expect = 2e-12 Identities = 117/159 (74%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| || ||| || ||||||||| || ||| || | |||||||| | | |||||| Sbjct 887307 CTCGATCAGCATCCCGATGGTCATGCGGGAGGGGAAGCCGTGCGGGTTGAACAGGATGTC 887366 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTT--- 449103 || ||| |||| | || |||||||||||||||| | | ||| ||| | | | Sbjct 887367 CGGGGTCATGCCGCTCTCGGTGAAGGGCATGTCCTC--CGCCGGCCA-CAGACGGCTCAG 887423 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCC 449142 || ||||||||| |||||||||||| |||||||| || Sbjct 887424 GATGCCCTTCTGTCCGTGGCGGCTGGCAAACTTGTCGCC 887462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084485853371682