Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq36 401 9e-110 seq34 284 2e-74 seq527 156 6e-36 seq306 82.4 1e-13 >seq36 Length=22739634 Score = 401 bits (444), Expect = 9e-110 Identities = 245/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 2123263 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 2123206 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2123205 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 2123146 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 2123145 CCCGGGCCTGTCGGCCAAGGCTATAAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 2123086 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2123085 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGCGGCCTAAAAG 2123026 Query 241 GCCAT-CTCCCTCGAA 255 ||| | |||||| || Sbjct 2123025 GCCGTAGTCCCTCTAA 2123010 >seq34 Length=18891512 Score = 284 bits (314), Expect = 2e-74 Identities = 204/231 (88%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||| | Sbjct 9246163 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCACGCTTACTAGGAATT-C 9246220 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||||| |||||| Sbjct 9246221 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACAGAGTTTCACAAGATT 9246280 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||||||||| | ||||| || | ||||||||||||||||||| Sbjct 9246281 ACCCAGACCTTCCGGCCAAGGAAAATAACTCGCTGGCTCTGTCAGTGTAGCGCGCGTGCG 9246340 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGT 230 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9246341 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGT 9246391 >seq527 Length=1699385 Score = 156 bits (172), Expect = 6e-36 Identities = 178/234 (76%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 1268077 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 1268020 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||||| | || | || |||| | |||| ||||||| |||| | || Sbjct 1268019 CTCGTTGATGGGAAATAGTTTCAATCCCCAGTCCCGATCACGAGCGGGGTTCAGCGGGTT 1267960 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| ||||| ||| | | || || ||| || ||| |||||||||| Sbjct 1267959 ACCCGCGCCTCTCGGCGCAGGGTAGACACACGCTGATCCGCCCATTGTGGCGCGCGTGCA 1267900 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||| | || |||||| Sbjct 1267899 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGTGGC 1267847 Score = 156 bits (172), Expect = 6e-36 Identities = 178/234 (76%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||||| | Sbjct 1280474 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAATT-C 1280417 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||||| | || | || |||| | |||| ||||||| |||| | || Sbjct 1280416 CTCGTTGATGGGAAATAGTTTCAATCCCCAGTCCCGATCACGAGCGGGGTTCAGCGGGTT 1280357 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||| ||||| ||| | | || || ||| || ||| |||||||||| Sbjct 1280356 ACCCGCGCCTCTCGGCGCAGGGTAGACACACGCTGATCCGCCCATTGTGGCGCGCGTGCA 1280297 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||| | || |||||| Sbjct 1280296 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCCATCTCGCGTGGC 1280244 Score = 93.3 bits (102), Expect = 6e-17 Identities = 84/103 (82%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| |||||||||| |||| ||| Sbjct 1591455 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAA-TTC 1591398 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 |||||||| | || | || |||| | |||| ||||||| Sbjct 1591397 CTCGTTGATGGGAAATAGTTTCAATCCCCAGTCCCGATCACGA 1591355 >seq306 Length=1427730 Score = 82.4 bits (90), Expect = 1e-13 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221 || ||| |||||||||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 1192113 CATTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCC 1192171 Query 222 AACTTCCGTGGC 233 | || |||||| Sbjct 1192172 ATCTCGCGTGGC 1192183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751931681270