Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq34 158 7e-37 seq527 131 9e-29 seq36 131 9e-29 seq319 93.3 2e-17 >seq34 Length=18891512 Score = 158 bits (174), Expect = 7e-37 Identities = 105/117 (90%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||||||||||||||||||| || || | | |||||| Sbjct 9246692 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGACACATAAGATTGAGGTCGCCC 9246751 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| Sbjct 9246752 GATCCCTAGTCGGCATAGTTTACTGTTAAGACTACAACGGTATCTGATCGTTTTCGA 9246808 >seq527 Length=1699385 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 1591008 GAACCCAAATACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 1590949 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 1590948 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 1590892 Score = 93.3 bits (102), Expect = 2e-17 Identities = 92/118 (78%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||||||||| || |||| || | | |||| ||| |||| ||||| |||| Sbjct 1267547 GAACCCAAAGACTCGTGGTTTCCCGCACGCTGCCCGGCGGGTCATGGGAATAACGCCGCC 1267488 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | |||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 1267487 GGATCGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 1267430 Score = 93.3 bits (102), Expect = 2e-17 Identities = 92/118 (78%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||||||||| || |||| || | | |||| ||| |||| ||||| |||| Sbjct 1279944 GAACCCAAAGACTCGTGGTTTCCCGCACGCTGCCCGGCGGGTCATGGGAATAACGCCGCC 1279885 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | |||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 1279884 GGATCGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 1279827 Score = 93.3 bits (102), Expect = 2e-17 Identities = 92/118 (78%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||||||||| || |||| || | | |||| ||| |||| ||||| |||| Sbjct 1606718 GAACCCAAAGACTCGTGGTTTCCCGCACGCTGCCCGGCGGGTCATGGGAATAACGCCGCC 1606659 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | |||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 1606658 GGATCGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 1606601 >seq36 Length=22739634 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 2122733 GAACCCAAATACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 2122674 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 2122673 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 2122617 >seq319 Length=554131 Score = 93.3 bits (102), Expect = 2e-17 Identities = 92/118 (78%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 |||||||||||||| || |||| || | | |||| ||| |||| ||||| |||| Sbjct 216290 GAACCCAAAGACTTGTGGTTTCCCGCACGCTGCCCGGCGGGTCATGGGAATAACGCCGCC 216231 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | ||||| || ||||||||| ||||||||||||||||||||||||||| Sbjct 216230 GGATCGCAGGTCGGTATCGTTTACGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 216173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278375523420