Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03]
9,378 sequences; 1,713,658,011 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq34 405 9e-111
seq36 221 2e-55
seq527 179 7e-43
seq319 179 7e-43
>seq34
Length=18891512
Score = 405 bits (448), Expect = 9e-111
Identities = 279/313 (89%), Gaps = 2/313 (1%)
Strand=Plus/Minus
Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGATCCG-CATGCCCTTCACTGGGTGTGCCGGGGAG 65
||| ||| ||| ||| ||| ||| || ||| |||||||||||||||||||| ||||||
Sbjct 9247121 GTCTGGCTGGGTCTTACCTCTTGGTGAGCCGGCATGCCCTTCACTGGGTGTGTCGGGGAA 9247062
Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATT 125
||||||||||||| |||| |||||||||||||||||||||||||| ||| |||||||||
Sbjct 9247061 CCAGGACTTTTACCTTGAGAAAATTAGAGTGTTCAAAGCAGGCCTATGCCTGAATACATT 9247002
Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTA 185
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 9247001 AGCATGGAATAATAAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGAGTCGCCGTA 9246942
Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245
|||||||||||||||||| ||||| | |||||||| ||| ||||||||||||||||||
Sbjct 9246941 ATGATTAATAGGGATAGTTGGGGGCATTAGTATTCAGTTGCTAGAGGTGAAATTCTTGGA 9246882
Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305
|||| ||||||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct 9246881 TTTACTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAA 9246823
Query 306 CGAAAGTTAGGGG 318
|||| ||||||||
Sbjct 9246822 CGAAGGTTAGGGG 9246810
>seq36
Length=22739634
Score = 221 bits (244), Expect = 2e-55
Identities = 200/248 (81%), Gaps = 3/248 (1%)
Strand=Plus/Plus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130
|| |||||||||| ||||||||||| |||||||| |||| |||| | ||||||||||||
Sbjct 2122370 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 2122429
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|| |||| | |||||| | |||| ||||| ||||| | ||| || ||||||||
Sbjct 2122430 GGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 2122488
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| ||||| || || ||| | ||||| || ||||||||||||||||||||||||||
Sbjct 2122489 TAACAGGGACAGCCGTGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 2122548
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||||| ||| ||||||||||| || ||||| |||||||||||||||| ||||||||
Sbjct 2122549 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAA 2122607
Query 311 GTTAGGGG 318
||| ||||
Sbjct 2122608 GTTGGGGG 2122615
>seq527
Length=1699385
Score = 179 bits (198), Expect = 7e-43
Identities = 221/294 (75%), Gaps = 20/294 (7%)
Strand=Plus/Plus
Query 35 CCGCATGCCCTTCACTGGGTGTGCCGG-------GGAGCCAGGA-CTTTTACTTTGAAAA 86
||| |||||||| |||||||| |||| || ||| ||| | |||||||||||||
Sbjct 1267133 CCGGATGCCCTTAGCTGGGTGT-CCGGTCACCTCGGGGCCCGGAGCGTTTACTTTGAAAA 1267191
Query 87 AATTAGAGTGTTCAAAGCAGGCC---TTT----GCTCGAATACATTAGCATGGAATAATA 139
||||||||||||||||||||||| | | ||| |||||| ||| ||||||||
Sbjct 1267192 AATTAGAGTGTTCAAAGCAGGCCGCCTGTCGCCGCT-GAATACCGCAGCTAGGAATAATG 1267250
Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGG 198
||||||||| | |||||||||||||| ||||||| | ||| | | |||||||| ||||
Sbjct 1267251 GAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCATGATTAAGAGGG 1267309
Query 199 ATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACT 258
| | |||||| | ||||| | |||||||||||||||||| |||||
Sbjct 1267310 ACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACG 1267369
Query 259 AACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
|| | |||||||| || ||||| |||||||||||||||| ||||||||||
Sbjct 1267370 GACGAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 1267422
Score = 179 bits (198), Expect = 7e-43
Identities = 221/294 (75%), Gaps = 20/294 (7%)
Strand=Plus/Plus
Query 35 CCGCATGCCCTTCACTGGGTGTGCCGG-------GGAGCCAGGA-CTTTTACTTTGAAAA 86
||| |||||||| |||||||| |||| || ||| ||| | |||||||||||||
Sbjct 1279530 CCGGATGCCCTTAGCTGGGTGT-CCGGTCACCTCGGGGCCCGGAGCGTTTACTTTGAAAA 1279588
Query 87 AATTAGAGTGTTCAAAGCAGGCC---TTT----GCTCGAATACATTAGCATGGAATAATA 139
||||||||||||||||||||||| | | ||| |||||| ||| ||||||||
Sbjct 1279589 AATTAGAGTGTTCAAAGCAGGCCGCCTGTCGCCGCT-GAATACCGCAGCTAGGAATAATG 1279647
Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGG 198
||||||||| | |||||||||||||| ||||||| | ||| | | |||||||| ||||
Sbjct 1279648 GAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCATGATTAAGAGGG 1279706
Query 199 ATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACT 258
| | |||||| | ||||| | |||||||||||||||||| |||||
Sbjct 1279707 ACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACG 1279766
Query 259 AACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
|| | |||||||| || ||||| |||||||||||||||| ||||||||||
Sbjct 1279767 GACGAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 1279819
Score = 176 bits (194), Expect = 8e-42
Identities = 219/293 (75%), Gaps = 18/293 (6%)
Strand=Plus/Plus
Query 35 CCGCATGCCCTTCACTGGGTGTGCCGG------GGAGCCAGGA-CTTTTACTTTGAAAAA 87
||| |||||||| |||||||| | | || ||| ||| | ||||||||||||||
Sbjct 1606304 CCGGATGCCCTTAGCTGGGTGTCCTGTCACCTCGGGGCCCGGAGCGTTTACTTTGAAAAA 1606363
Query 88 ATTAGAGTGTTCAAAGCAGGCC---TTT----GCTCGAATACATTAGCATGGAATAATAG 140
|||||||||||||||||||||| | | ||| |||||| ||| |||||||| |
Sbjct 1606364 ATTAGAGTGTTCAAAGCAGGCCGCCTGTCGCCGCT-GAATACCGCAGCTAGGAATAATGG 1606422
Query 141 AATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGA 199
|||||||| | |||||||||||||| ||||||| | ||| | | |||||||| |||||
Sbjct 1606423 AATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCATGATTAAGAGGGA 1606481
Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259
| |||||| | ||||| | |||||||||||||||||| |||||
Sbjct 1606482 CGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGG 1606541
Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
|| | |||||||| || ||||| |||||||||||||||| ||||||||||
Sbjct 1606542 ACGAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 1606593
Score = 141 bits (156), Expect = 2e-31
Identities = 147/189 (78%), Gaps = 3/189 (2%)
Strand=Plus/Plus
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGA 189
|||||||| ||||||||| | |||||||||||||| ||||||| | ||| | | ||||
Sbjct 1590704 GGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCATGA 1590762
Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249
|||| ||||| | |||||| | ||||| | ||||||||||||||||||
Sbjct 1590763 TTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGG 1590822
Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309
||||| ||| ||||||||||| || ||||| |||||||||||||||| |||||||
Sbjct 1590823 CGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAA 1590881
Query 310 AGTTAGGGG 318
|||| ||||
Sbjct 1590882 AGTTGGGGG 1590890
Score = 77.0 bits (84), Expect = 6e-12
Identities = 68/83 (82%), Gaps = 9/83 (11%)
Strand=Plus/Plus
Query 35 CCGCATGCCCTTCACTGGGTGTGCCGG-------GGAGCCAGGA-CTTTTACTTTGAAAA 86
||| |||||||| |||||||| |||| || ||| ||| | |||||||||||||
Sbjct 1253692 CCGGATGCCCTTAGCTGGGTGT-CCGGTCACCTCGGGGCCCGGAGCGTTTACTTTGAAAA 1253750
Query 87 AATTAGAGTGTTCAAAGCAGGCC 109
|||||||||||||||||||||||
Sbjct 1253751 AATTAGAGTGTTCAAAGCAGGCC 1253773
>seq319
Length=554131
Score = 179 bits (198), Expect = 7e-43
Identities = 221/294 (75%), Gaps = 20/294 (7%)
Strand=Plus/Plus
Query 35 CCGCATGCCCTTCACTGGGTGTGCCGG-------GGAGCCAGGA-CTTTTACTTTGAAAA 86
||| |||||||| |||||||| |||| || ||| ||| | |||||||| ||||
Sbjct 215876 CCGGATGCCCTTAGCTGGGTGT-CCGGTCACCTCGGGGCCCGGAGCGTTTACTTTTAAAA 215934
Query 87 AATTAGAGTGTTCAAAGCAGGCC---TTT----GCTCGAATACATTAGCATGGAATAATA 139
||||||||||||||||||||||| | | ||| |||||| ||| ||||||||
Sbjct 215935 AATTAGAGTGTTCAAAGCAGGCCGCCTGTCGCCGCT-GAATACCACAGCTAGGAATAATG 215993
Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGG 198
||||||||| | |||||||||||||| ||||||| | ||| | | |||||||| ||||
Sbjct 215994 GAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCATGATTAAGAGGG 216052
Query 199 ATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACT 258
| || |||||| | ||||| | |||||||||||||||||| |||||
Sbjct 216053 ACAGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACG 216112
Query 259 AACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
||| | || ||||| || ||||| |||||||||||||||| ||||||||||
Sbjct 216113 AACGAAAGCAAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 216165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915114172544
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |