Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq34 405 9e-111 seq36 221 2e-55 seq527 179 7e-43 seq319 179 7e-43 >seq34 Length=18891512 Score = 405 bits (448), Expect = 9e-111 Identities = 279/313 (89%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 7 GTCCGGCCGGGCCTTTCCTTCTGGGGATCCG-CATGCCCTTCACTGGGTGTGCCGGGGAG 65 ||| ||| ||| ||| ||| ||| || ||| |||||||||||||||||||| |||||| Sbjct 9247121 GTCTGGCTGGGTCTTACCTCTTGGTGAGCCGGCATGCCCTTCACTGGGTGTGTCGGGGAA 9247062 Query 66 CCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATT 125 ||||||||||||| |||| |||||||||||||||||||||||||| ||| ||||||||| Sbjct 9247061 CCAGGACTTTTACCTTGAGAAAATTAGAGTGTTCAAAGCAGGCCTATGCCTGAATACATT 9247002 Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTA 185 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 9247001 AGCATGGAATAATAAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGAGTCGCCGTA 9246942 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||||||||||||| ||||| | |||||||| ||| |||||||||||||||||| Sbjct 9246941 ATGATTAATAGGGATAGTTGGGGGCATTAGTATTCAGTTGCTAGAGGTGAAATTCTTGGA 9246882 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 |||| ||||||||||||||||||||||| || |||||||||||||||||||||| ||| Sbjct 9246881 TTTACTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAA 9246823 Query 306 CGAAAGTTAGGGG 318 |||| |||||||| Sbjct 9246822 CGAAGGTTAGGGG 9246810 >seq36 Length=22739634 Score = 221 bits (244), Expect = 2e-55 Identities = 200/248 (81%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 2122370 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 2122429 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | |||| ||||| ||||| | ||| || |||||||| Sbjct 2122430 GGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGAGTAATGAT 2122488 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| || || ||| | ||||| || |||||||||||||||||||||||||| Sbjct 2122489 TAACAGGGACAGCCGTGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 2122548 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || ||||| |||||||||||||||| |||||||| Sbjct 2122549 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAA 2122607 Query 311 GTTAGGGG 318 ||| |||| Sbjct 2122608 GTTGGGGG 2122615 >seq527 Length=1699385 Score = 179 bits (198), Expect = 7e-43 Identities = 221/294 (75%), Gaps = 20/294 (7%) Strand=Plus/Plus Query 35 CCGCATGCCCTTCACTGGGTGTGCCGG-------GGAGCCAGGA-CTTTTACTTTGAAAA 86 ||| |||||||| |||||||| |||| || ||| ||| | ||||||||||||| Sbjct 1267133 CCGGATGCCCTTAGCTGGGTGT-CCGGTCACCTCGGGGCCCGGAGCGTTTACTTTGAAAA 1267191 Query 87 AATTAGAGTGTTCAAAGCAGGCC---TTT----GCTCGAATACATTAGCATGGAATAATA 139 ||||||||||||||||||||||| | | ||| |||||| ||| |||||||| Sbjct 1267192 AATTAGAGTGTTCAAAGCAGGCCGCCTGTCGCCGCT-GAATACCGCAGCTAGGAATAATG 1267250 Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGG 198 ||||||||| | |||||||||||||| ||||||| | ||| | | |||||||| |||| Sbjct 1267251 GAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCATGATTAAGAGGG 1267309 Query 199 ATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACT 258 | | |||||| | ||||| | |||||||||||||||||| ||||| Sbjct 1267310 ACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACG 1267369 Query 259 AACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || | |||||||| || ||||| |||||||||||||||| |||||||||| Sbjct 1267370 GACGAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 1267422 Score = 179 bits (198), Expect = 7e-43 Identities = 221/294 (75%), Gaps = 20/294 (7%) Strand=Plus/Plus Query 35 CCGCATGCCCTTCACTGGGTGTGCCGG-------GGAGCCAGGA-CTTTTACTTTGAAAA 86 ||| |||||||| |||||||| |||| || ||| ||| | ||||||||||||| Sbjct 1279530 CCGGATGCCCTTAGCTGGGTGT-CCGGTCACCTCGGGGCCCGGAGCGTTTACTTTGAAAA 1279588 Query 87 AATTAGAGTGTTCAAAGCAGGCC---TTT----GCTCGAATACATTAGCATGGAATAATA 139 ||||||||||||||||||||||| | | ||| |||||| ||| |||||||| Sbjct 1279589 AATTAGAGTGTTCAAAGCAGGCCGCCTGTCGCCGCT-GAATACCGCAGCTAGGAATAATG 1279647 Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGG 198 ||||||||| | |||||||||||||| ||||||| | ||| | | |||||||| |||| Sbjct 1279648 GAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCATGATTAAGAGGG 1279706 Query 199 ATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACT 258 | | |||||| | ||||| | |||||||||||||||||| ||||| Sbjct 1279707 ACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACG 1279766 Query 259 AACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || | |||||||| || ||||| |||||||||||||||| |||||||||| Sbjct 1279767 GACGAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 1279819 Score = 176 bits (194), Expect = 8e-42 Identities = 219/293 (75%), Gaps = 18/293 (6%) Strand=Plus/Plus Query 35 CCGCATGCCCTTCACTGGGTGTGCCGG------GGAGCCAGGA-CTTTTACTTTGAAAAA 87 ||| |||||||| |||||||| | | || ||| ||| | |||||||||||||| Sbjct 1606304 CCGGATGCCCTTAGCTGGGTGTCCTGTCACCTCGGGGCCCGGAGCGTTTACTTTGAAAAA 1606363 Query 88 ATTAGAGTGTTCAAAGCAGGCC---TTT----GCTCGAATACATTAGCATGGAATAATAG 140 |||||||||||||||||||||| | | ||| |||||| ||| |||||||| | Sbjct 1606364 ATTAGAGTGTTCAAAGCAGGCCGCCTGTCGCCGCT-GAATACCGCAGCTAGGAATAATGG 1606422 Query 141 AATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGA 199 |||||||| | |||||||||||||| ||||||| | ||| | | |||||||| ||||| Sbjct 1606423 AATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCATGATTAAGAGGGA 1606481 Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259 | |||||| | ||||| | |||||||||||||||||| ||||| Sbjct 1606482 CGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGG 1606541 Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || | |||||||| || ||||| |||||||||||||||| |||||||||| Sbjct 1606542 ACGAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 1606593 Score = 141 bits (156), Expect = 2e-31 Identities = 147/189 (78%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGA 189 |||||||| ||||||||| | |||||||||||||| ||||||| | ||| | | |||| Sbjct 1590704 GGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCATGA 1590762 Query 190 TTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| ||||| | |||||| | ||||| | |||||||||||||||||| Sbjct 1590763 TTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGG 1590822 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 ||||| ||| ||||||||||| || ||||| |||||||||||||||| ||||||| Sbjct 1590823 CGCAAGACGAACAACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAA 1590881 Query 310 AGTTAGGGG 318 |||| |||| Sbjct 1590882 AGTTGGGGG 1590890 Score = 77.0 bits (84), Expect = 6e-12 Identities = 68/83 (82%), Gaps = 9/83 (11%) Strand=Plus/Plus Query 35 CCGCATGCCCTTCACTGGGTGTGCCGG-------GGAGCCAGGA-CTTTTACTTTGAAAA 86 ||| |||||||| |||||||| |||| || ||| ||| | ||||||||||||| Sbjct 1253692 CCGGATGCCCTTAGCTGGGTGT-CCGGTCACCTCGGGGCCCGGAGCGTTTACTTTGAAAA 1253750 Query 87 AATTAGAGTGTTCAAAGCAGGCC 109 ||||||||||||||||||||||| Sbjct 1253751 AATTAGAGTGTTCAAAGCAGGCC 1253773 >seq319 Length=554131 Score = 179 bits (198), Expect = 7e-43 Identities = 221/294 (75%), Gaps = 20/294 (7%) Strand=Plus/Plus Query 35 CCGCATGCCCTTCACTGGGTGTGCCGG-------GGAGCCAGGA-CTTTTACTTTGAAAA 86 ||| |||||||| |||||||| |||| || ||| ||| | |||||||| |||| Sbjct 215876 CCGGATGCCCTTAGCTGGGTGT-CCGGTCACCTCGGGGCCCGGAGCGTTTACTTTTAAAA 215934 Query 87 AATTAGAGTGTTCAAAGCAGGCC---TTT----GCTCGAATACATTAGCATGGAATAATA 139 ||||||||||||||||||||||| | | ||| |||||| ||| |||||||| Sbjct 215935 AATTAGAGTGTTCAAAGCAGGCCGCCTGTCGCCGCT-GAATACCACAGCTAGGAATAATG 215993 Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGG 198 ||||||||| | |||||||||||||| ||||||| | ||| | | |||||||| |||| Sbjct 215994 GAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCCATGATTAAGAGGG 216052 Query 199 ATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACT 258 | || |||||| | ||||| | |||||||||||||||||| ||||| Sbjct 216053 ACAGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACG 216112 Query 259 AACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||| | || ||||| || ||||| |||||||||||||||| |||||||||| Sbjct 216113 AACGAAAGCAAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 216165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915114172544