Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq34 349 1e-93 seq527 242 2e-61 seq36 221 5e-55 >seq34 Length=18891512 Score = 349 bits (386), Expect = 1e-93 Identities = 264/309 (85%), Gaps = 8/309 (3%) Strand=Plus/Minus Query 379 TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAA 438 |||||||||||| |||||| | ||| || ||||||||| ||||||||||||||||||||| Sbjct 9245657 TAGGATGCTGGCATAATGGCTTTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAA 9245598 Query 439 CATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 ||| |||||||||||||||| ||||||| |||||||||||||||||| || || | Sbjct 9245597 CATACCTGCGAGTGTTTGGGTGGAAAACCCGAGCGCGTAATGAAAGTGAA---AGTTGAG 9245541 Query 499 AACCC----GTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAA 554 | ||| ||| ||| ||||| || ||| ||||| || || || |||| | | | Sbjct 9245540 ATCCCTGTCGTG-GGGAGCACCGACGCCCGGACCTGACGTTCTCTGACGGATCCGCGGTA 9245482 Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9245481 GAGCATGTATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 9245422 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||| Sbjct 9245421 GAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTA 9245362 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 9245361 TAGGGGCGA 9245353 >seq527 Length=1699385 Score = 242 bits (268), Expect = 2e-61 Identities = 223/280 (80%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 |||||||||||| ||||||||||||||||||| |||| | ||||||| |||| || Sbjct 1282406 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTAGGAA 1282465 Query 465 ACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACC 523 |||||| | || || ||| ||| || ||||| ||| ||||||||| ||||| Sbjct 1282466 ACCCGTAAGGCGCAAGGAAGCTGATTGG---TGGGATCCCTCACGGGTGCACCGCCGACC 1282522 Query 524 GATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGG 583 || | |||| | | || || || |||| ||||||| |||| |||||||||||||||| Sbjct 1282523 GACCTTGATCTTCTGAGAAGGGTTCGAGTGAGAGCATGCCTGTCGGGACCCGAAAGATGG 1282582 Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 |||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| | | Sbjct 1282583 TGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATAC 1282642 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||||||||| ||||| | ||||||||||| |||| Sbjct 1282643 TGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGAGCGA 1282682 Score = 143 bits (158), Expect = 1e-31 Identities = 102/117 (87%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| |||||||||||||||||||||||||| |||| |||||||| |||||| |||||| Sbjct 1254951 TGGTACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGGGGAAACCCTGGTG 1255010 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||||||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 1255011 GAGGCCCGCAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 1255067 Score = 143 bits (158), Expect = 1e-31 Identities = 102/117 (87%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 ||| |||||||||||||||||||||||||| |||| |||||||| |||||| |||||| Sbjct 1607530 TGGTACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGGGGAAACCCTGGTG 1607589 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||||||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 1607590 GAGGCCCGCAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 1607646 Score = 127 bits (140), Expect = 9e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 1269086 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 1269145 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| |||| ||||| ||||||| |||||| | Sbjct 1269146 ACCGGCACGAGACCGATAGTCGACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 1269205 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 1269206 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 1269245 >seq36 Length=22739634 Score = 221 bits (244), Expect = 5e-55 Identities = 222/282 (79%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGG-TGTCA 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | Sbjct 2124692 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCTAGTA 2124751 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGG-TGCACCATCGA 521 ||||||| | || || |||| | | ||| | | ||| ||||| |||||| ||| Sbjct 2124752 AACCCGTAAGGCGCAAGGAAACTAACCGGCGC-GATCCCCCTCGAGGGGTGCACCGCCGA 2124810 Query 522 CCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 |||| | | || | | || || || |||| ||||||| |||| |||||||||||||| Sbjct 2124811 CCGACCTTAATCTTCTGAGAAGGGTTCGAGT--GAGCATACCTGTCGGGACCCGAAAGAT 2124868 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 |||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| | Sbjct 2124869 GGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGAT 2124928 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 2124929 ACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 2124970 Score = 163 bits (180), Expect = 1e-37 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 2124308 TCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 2124367 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 2124368 TAAATACGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 2124427 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 2124428 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 2124472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079798841900