Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03]
9,378 sequences; 1,713,658,011 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq34 233 2e-59
seq36 118 1e-24
seq527 107 2e-21
seq319 107 2e-21
>seq34
Length=18891512
Score = 233 bits (258), Expect = 2e-59
Identities = 166/189 (88%), Gaps = 1/189 (1%)
Strand=Plus/Minus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
||||||||||||||||| |||| |||||||||| ||||||||||||||| ||| |||||
Sbjct 9247065 GGAACCAGGACTTTTACCTTGAGAAAATTAGAGTGTTCAAAGCAGGCCTATGCCTGAATA 9247006
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| |||||||||||| ||||||||||||||||||||||||| ||||||||| ||
Sbjct 9247005 CATTAGCATGGAATAATAAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGAGTCG- 9246947
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
|||||||||| |||| ||||||| ||||| | |||||||| ||| | |||||||||||
Sbjct 9246946 CCGTAATGATTAATAGGGATAGTTGGGGGCATTAGTATTCAGTTGCTAGAGGTGAAATTC 9246887
Query 181 TTGGATTTA 189
|||||||||
Sbjct 9246886 TTGGATTTA 9246878
>seq36
Length=22739634
Score = 118 bits (130), Expect = 1e-24
Identities = 137/181 (76%), Gaps = 3/181 (2%)
Strand=Plus/Plus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||
Sbjct 2122370 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 2122429
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| || || | ||| || |||||||
Sbjct 2122430 GGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGA-GTAATGA 2122487
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| || || ||| | ||||| || |||| ||||||||||||||||||||
Sbjct 2122488 TTAACAGGGACAGCCGTGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 2122547
Query 190 T 190
|
Sbjct 2122548 T 2122548
>seq527
Length=1699385
Score = 107 bits (118), Expect = 2e-21
Identities = 134/180 (74%), Gaps = 9/180 (5%)
Strand=Plus/Plus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAG---GCCTTT----GCTCGAATACATTA 65
||||||||||||||||||||| ||||||||||| |||| | ||| |||||| |
Sbjct 1267179 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGCCTGTCGCCGCT-GAATACCGCA 1267237
Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125
| |||||||| ||||||||| | |||||||||||||| ||||||| | ||| |
Sbjct 1267238 GCTAGGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCC 1267296
Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185
||||| || | ||| | |||||| | ||||| | | ||||||||||||||||
Sbjct 1267297 ATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 1267356
Score = 107 bits (118), Expect = 2e-21
Identities = 134/180 (74%), Gaps = 9/180 (5%)
Strand=Plus/Plus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAG---GCCTTT----GCTCGAATACATTA 65
||||||||||||||||||||| ||||||||||| |||| | ||| |||||| |
Sbjct 1279576 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGCCTGTCGCCGCT-GAATACCGCA 1279634
Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125
| |||||||| ||||||||| | |||||||||||||| ||||||| | ||| |
Sbjct 1279635 GCTAGGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCC 1279693
Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185
||||| || | ||| | |||||| | ||||| | | ||||||||||||||||
Sbjct 1279694 ATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 1279753
Score = 107 bits (118), Expect = 2e-21
Identities = 134/180 (74%), Gaps = 9/180 (5%)
Strand=Plus/Plus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAG---GCCTTT----GCTCGAATACATTA 65
||||||||||||||||||||| ||||||||||| |||| | ||| |||||| |
Sbjct 1606350 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGCCTGTCGCCGCT-GAATACCGCA 1606408
Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125
| |||||||| ||||||||| | |||||||||||||| ||||||| | ||| |
Sbjct 1606409 GCTAGGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCC 1606467
Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185
||||| || | ||| | |||||| | ||||| | | ||||||||||||||||
Sbjct 1606468 ATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 1606527
>seq319
Length=554131
Score = 107 bits (118), Expect = 2e-21
Identities = 134/180 (74%), Gaps = 9/180 (5%)
Strand=Plus/Plus
Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAG---GCCTTT----GCTCGAATACATTA 65
|||||||| |||||||||||| ||||||||||| |||| | ||| |||||| |
Sbjct 215922 TTTACTTTTAAAAAATTAGAGTGTTCAAAGCAGGCCGCCTGTCGCCGCT-GAATACCACA 215980
Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125
| |||||||| ||||||||| | |||||||||||||| ||||||| | ||| |
Sbjct 215981 GCTAGGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCC 216039
Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185
||||| || | ||| || |||||| | ||||| | | ||||||||||||||||
Sbjct 216040 ATGATTAAGAGGGACAGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 216099
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511953485120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |