Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq34 233 2e-59 seq36 118 1e-24 seq527 107 2e-21 seq319 107 2e-21 >seq34 Length=18891512 Score = 233 bits (258), Expect = 2e-59 Identities = 166/189 (88%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||||||||||||||| |||| |||||||||| ||||||||||||||| ||| ||||| Sbjct 9247065 GGAACCAGGACTTTTACCTTGAGAAAATTAGAGTGTTCAAAGCAGGCCTATGCCTGAATA 9247006 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||| ||||||||||||||||||||||||| ||||||||| || Sbjct 9247005 CATTAGCATGGAATAATAAAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGAGTCG- 9246947 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||||||| ||||| | |||||||| ||| | ||||||||||| Sbjct 9246946 CCGTAATGATTAATAGGGATAGTTGGGGGCATTAGTATTCAGTTGCTAGAGGTGAAATTC 9246887 Query 181 TTGGATTTA 189 ||||||||| Sbjct 9246886 TTGGATTTA 9246878 >seq36 Length=22739634 Score = 118 bits (130), Expect = 1e-24 Identities = 137/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 2122370 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 2122429 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| || || | ||| || ||||||| Sbjct 2122430 GGGATAACATTATAGGATTT-CGGTCCTATTACGTTGGCCTTCGGGATCGGA-GTAATGA 2122487 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| || || ||| | ||||| || |||| |||||||||||||||||||| Sbjct 2122488 TTAACAGGGACAGCCGTGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 2122547 Query 190 T 190 | Sbjct 2122548 T 2122548 >seq527 Length=1699385 Score = 107 bits (118), Expect = 2e-21 Identities = 134/180 (74%), Gaps = 9/180 (5%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAG---GCCTTT----GCTCGAATACATTA 65 ||||||||||||||||||||| ||||||||||| |||| | ||| |||||| | Sbjct 1267179 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGCCTGTCGCCGCT-GAATACCGCA 1267237 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125 | |||||||| ||||||||| | |||||||||||||| ||||||| | ||| | Sbjct 1267238 GCTAGGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCC 1267296 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 1267297 ATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 1267356 Score = 107 bits (118), Expect = 2e-21 Identities = 134/180 (74%), Gaps = 9/180 (5%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAG---GCCTTT----GCTCGAATACATTA 65 ||||||||||||||||||||| ||||||||||| |||| | ||| |||||| | Sbjct 1279576 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGCCTGTCGCCGCT-GAATACCGCA 1279634 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125 | |||||||| ||||||||| | |||||||||||||| ||||||| | ||| | Sbjct 1279635 GCTAGGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCC 1279693 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 1279694 ATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 1279753 Score = 107 bits (118), Expect = 2e-21 Identities = 134/180 (74%), Gaps = 9/180 (5%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAG---GCCTTT----GCTCGAATACATTA 65 ||||||||||||||||||||| ||||||||||| |||| | ||| |||||| | Sbjct 1606350 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGCCTGTCGCCGCT-GAATACCGCA 1606408 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125 | |||||||| ||||||||| | |||||||||||||| ||||||| | ||| | Sbjct 1606409 GCTAGGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCC 1606467 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 1606468 ATGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 1606527 >seq319 Length=554131 Score = 107 bits (118), Expect = 2e-21 Identities = 134/180 (74%), Gaps = 9/180 (5%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAG---GCCTTT----GCTCGAATACATTA 65 |||||||| |||||||||||| ||||||||||| |||| | ||| |||||| | Sbjct 215922 TTTACTTTTAAAAAATTAGAGTGTTCAAAGCAGGCCGCCTGTCGCCGCT-GAATACCACA 215980 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125 | |||||||| ||||||||| | |||||||||||||| ||||||| | ||| | Sbjct 215981 GCTAGGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGCC 216039 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| || | ||| || |||||| | ||||| | | |||||||||||||||| Sbjct 216040 ATGATTAAGAGGGACAGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 216099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511953485120