Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq34 461 1e-127 seq36 307 2e-81 seq527 167 4e-39 seq306 87.8 3e-15 >seq34 Length=18891512 Score = 461 bits (510), Expect = 1e-127 Identities = 289/310 (93%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||| |||||||||||| ||||| || ||||||||||||||||| Sbjct 9246473 GAACGAGACCTTAACCTGCTTAATAGCCAGGCCGGCTTTTGCTGGTCGCCGGCTTCTTAG 9246414 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||| || || || ||| || |||||||||||||||||||||||||||||||||||| Sbjct 9246413 AGGGACTGTCTGCGTCTAGCAGACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 9246354 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 |||||||||||||||||||||||||||||||||||||||| |||||| | |||||||| Sbjct 9246353 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAGCGAGTTATTTTCCTTGGCC 9246294 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 9246293 GGAAGGTCTGGGTAATCTTGTGAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 9246234 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| ||||||||||| | ||||||||| |||||||||||||||||| Sbjct 9246233 GCTCTTCAACGAGGAATTCCTAGTAAGCGTGAGTCATCAGCTCGCGTTGATTACGTCCCT 9246174 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 9246173 GCCCTTTGTA 9246164 >seq36 Length=22739634 Score = 307 bits (340), Expect = 2e-81 Identities = 230/265 (87%), Gaps = 6/265 (2%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAG 123 ||| ||||||||||||||||| |||| | | |||| ||||||||||||||||||||| Sbjct 2123001 GCCAGCTTCTTAGAGGGACTA-CGGCCTTTTAGGCCGC-GGAAGTTTGAGGCAATAACAG 2123058 Query 124 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG 183 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 2123059 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAG 2123118 Query 184 TTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAG 243 || || ||||||||| ||| | |||||||||| | ||| | ||||| ||||||||| Sbjct 2123119 TTTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAG 2123177 Query 244 AGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGC 303 | |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| ||| Sbjct 2123178 ATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGC 2123237 Query 304 GTTGATTACGTCCCTGCCCTTTGTA 328 ||||| ||||||||||||||||||| Sbjct 2123238 GTTGACTACGTCCCTGCCCTTTGTA 2123262 >seq527 Length=1699385 Score = 167 bits (184), Expect = 4e-39 Identities = 194/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || | ||| |||||||||||||||| Sbjct 1267821 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 1267878 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | || || || | Sbjct 1267879 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAGCGTGTGTCTAC 1267938 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| |||||| | | || | | ||||| | |||| | | |||| Sbjct 1267939 CCTGCGCCGAGAGGCGCGGGTAACCCGCTGAACCCCGCTCGTGATCGGGACTGGGGATTG 1267998 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 || |||| | | |||||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 1267999 AAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 1268058 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 1268059 AAGTCCCTGCCCTTTGTA 1268076 Score = 167 bits (184), Expect = 4e-39 Identities = 194/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || | ||| |||||||||||||||| Sbjct 1280218 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 1280275 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | || || || | Sbjct 1280276 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAGCGTGTGTCTAC 1280335 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| |||||| | | || | | ||||| | |||| | | |||| Sbjct 1280336 CCTGCGCCGAGAGGCGCGGGTAACCCGCTGAACCCCGCTCGTGATCGGGACTGGGGATTG 1280395 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 || |||| | | |||||||||||| || |||||||||| ||||| ||| |||||||||| Sbjct 1280396 AAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 1280455 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 1280456 AAGTCCCTGCCCTTTGTA 1280473 Score = 104 bits (114), Expect = 4e-20 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| | |||| | | |||| || |||| | | |||||||||||| || ||||||||| Sbjct 1591355 TCGTGATCGGGACTGGGGATTGAAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGC 1591414 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| ||||||||||| |||||||||||||||| Sbjct 1591415 GGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTA 1591454 >seq306 Length=1427730 Score = 87.8 bits (96), Expect = 3e-15 Identities = 81/99 (82%), Gaps = 3/99 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || | ||| |||||||||||||||| Sbjct 1192209 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 1192152 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 |||||||||||||| | |||| |||||||||| ||| || Sbjct 1192151 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATG 1192113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947111171584