Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03]
9,378 sequences; 1,713,658,011 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq34 461 1e-127
seq36 307 2e-81
seq527 167 4e-39
seq306 87.8 3e-15
>seq34
Length=18891512
Score = 461 bits (510), Expect = 1e-127
Identities = 289/310 (93%), Gaps = 1/310 (0%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| ||||||||||||||||| |||||||||||| ||||| || |||||||||||||||||
Sbjct 9246473 GAACGAGACCTTAACCTGCTTAATAGCCAGGCCGGCTTTTGCTGGTCGCCGGCTTCTTAG 9246414
Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138
||||||| || || || ||| || ||||||||||||||||||||||||||||||||||||
Sbjct 9246413 AGGGACTGTCTGCGTCTAGCAGACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 9246354
Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198
|||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct 9246353 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAGCGAGTTATTTTCCTTGGCC 9246294
Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 9246293 GGAAGGTCTGGGTAATCTTGTGAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 9246234
Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318
||||||||||||||||| ||||||||||| | ||||||||| ||||||||||||||||||
Sbjct 9246233 GCTCTTCAACGAGGAATTCCTAGTAAGCGTGAGTCATCAGCTCGCGTTGATTACGTCCCT 9246174
Query 319 GCCCTTTGTA 328
||||||||||
Sbjct 9246173 GCCCTTTGTA 9246164
>seq36
Length=22739634
Score = 307 bits (340), Expect = 2e-81
Identities = 230/265 (87%), Gaps = 6/265 (2%)
Strand=Plus/Plus
Query 67 GCCGGCTTCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAG 123
||| ||||||||||||||||| |||| | | |||| |||||||||||||||||||||
Sbjct 2123001 GCCAGCTTCTTAGAGGGACTA-CGGCCTTTTAGGCCGC-GGAAGTTTGAGGCAATAACAG 2123058
Query 124 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG 183
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 2123059 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAG 2123118
Query 184 TTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAG 243
|| || ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||
Sbjct 2123119 TTTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAG 2123177
Query 244 AGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGC 303
| |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||
Sbjct 2123178 ATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGC 2123237
Query 304 GTTGATTACGTCCCTGCCCTTTGTA 328
||||| |||||||||||||||||||
Sbjct 2123238 GTTGACTACGTCCCTGCCCTTTGTA 2123262
>seq527
Length=1699385
Score = 167 bits (184), Expect = 4e-39
Identities = 194/258 (75%), Gaps = 3/258 (1%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| | | || | ||| ||||||||||||||||
Sbjct 1267821 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 1267878
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| |||||||||| ||| || | || || || |
Sbjct 1267879 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAGCGTGTGTCTAC 1267938
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| |||| ||| |||||| | | || | | ||||| | |||| | | ||||
Sbjct 1267939 CCTGCGCCGAGAGGCGCGGGTAACCCGCTGAACCCCGCTCGTGATCGGGACTGGGGATTG 1267998
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|| |||| | | |||||||||||| || |||||||||| ||||| ||| ||||||||||
Sbjct 1267999 AAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 1268058
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 1268059 AAGTCCCTGCCCTTTGTA 1268076
Score = 167 bits (184), Expect = 4e-39
Identities = 194/258 (75%), Gaps = 3/258 (1%)
Strand=Plus/Plus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| | | || | ||| ||||||||||||||||
Sbjct 1280218 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 1280275
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190
|||||||||||||| | |||| |||||||||| ||| || | || || || |
Sbjct 1280276 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAGCGTGTGTCTAC 1280335
Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250
||| |||| ||| |||||| | | || | | ||||| | |||| | | ||||
Sbjct 1280336 CCTGCGCCGAGAGGCGCGGGTAACCCGCTGAACCCCGCTCGTGATCGGGACTGGGGATTG 1280395
Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310
|| |||| | | |||||||||||| || |||||||||| ||||| ||| ||||||||||
Sbjct 1280396 AAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATT 1280455
Query 311 ACGTCCCTGCCCTTTGTA 328
| ||||||||||||||||
Sbjct 1280456 AAGTCCCTGCCCTTTGTA 1280473
Score = 104 bits (114), Expect = 4e-20
Identities = 83/100 (83%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288
||||| | |||| | | |||| || |||| | | |||||||||||| || |||||||||
Sbjct 1591355 TCGTGATCGGGACTGGGGATTGAAACTATTTCCCATCAACGAGGAATTCCCAGTAAGCGC 1591414
Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| ||||| ||| ||||||||||| ||||||||||||||||
Sbjct 1591415 GGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTA 1591454
>seq306
Length=1427730
Score = 87.8 bits (96), Expect = 3e-15
Identities = 81/99 (82%), Gaps = 3/99 (3%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| | | || | ||| ||||||||||||||||
Sbjct 1192209 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 1192152
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169
|||||||||||||| | |||| |||||||||| ||| ||
Sbjct 1192151 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATG 1192113
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947111171584
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |