Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03]
9,378 sequences; 1,713,658,011 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq527 434 3e-119
seq2823 271 2e-70
seq7858 228 3e-57
seq14 228 3e-57
seq529 165 3e-38
seq34 86.0 2e-14
>seq527
Length=1699385
Score = 434 bits (480), Expect = 3e-119
Identities = 261/275 (95%), Gaps = 0/275 (0%)
Strand=Plus/Minus
Query 259 CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 318
|| ||| |||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1256918 CATGTCTCTTCACAGTGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 1256859
Query 319 TTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGA 378
||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1256858 TTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAGGTAGGGACAGTGGGA 1256799
Query 379 ATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 438
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256798 ATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 1256739
Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1256738 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACAT 1256679
Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||| |||||||||
Sbjct 1256678 TCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 1256644
>seq2823
Length=178462
Score = 271 bits (300), Expect = 2e-70
Identities = 215/257 (84%), Gaps = 12/257 (5%)
Strand=Plus/Plus
Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCC----------GAAACGG- 236
||||| | |||||||||| |||||||||||||||| | | | || | ||
Sbjct 63276 TAAGTGAGGAAACGATAAGAGTAGTGGTATTTCACTGGTGGCTCCCTTTCGTGACAGGGG 63335
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
||||||||||||| |||||||||| ||| || ||| | | ||||||||| ||||||||
Sbjct 63336 CTCCCACTTATTCCACACCTCTCATGTCTCTTTACAGTGCCAGACTAGAGTTAAGCTCAA 63395
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCC-GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355
|| ||||||||||||| |||||| | |||||||| |||||||||||||||||||| |||
Sbjct 63396 CATGGTCTTCTTTCCCAACTGATTTCTGCCAAGCCTGTTCCCTTGGCTGTGGTTTCACTA 63455
Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415
||||| || |||||||||| ||||||||||| ||||||||||||| ||||||||||||||
Sbjct 63456 GATAGCAGGTAGGGACAGTAGGAATCTCGTTCATCCATTCATGCGTGTCACTAATTAGAT 63515
Query 416 GACGAGGCATTTGGCTA 432
|||||||||||||||||
Sbjct 63516 GACGAGGCATTTGGCTA 63532
Score = 95.1 bits (104), Expect = 4e-17
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| |||| ||||||| |||| |||| |||||||||||||| || |
Sbjct 62432 CTTCTGCTCCGTGGGAGGTTTCTGTCCTCCCTGAGCTTGCCTTAGGACACCTGTGTAACC 62491
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
|||| |||| ||| ||||||||| ||||||||||||||| || ||||
Sbjct 62492 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTC 62538
>seq7858
Length=1962973
Score = 228 bits (252), Expect = 3e-57
Identities = 197/245 (80%), Gaps = 17/245 (7%)
Strand=Plus/Plus
Query 197 aaaCGATAAGGGTAGTGGTATTTCACTT--GCGCCGAAACGG-------CTCCCACTTAT 247
|||||||||| ||||||||||||||| | ||| | || ||| ||||||
Sbjct 1624757 AAACGATAAGCGTAGTGGTATTTCACCAAGGTGCCCATCTGGATGGGGCCTCTGACTTAT 1624816
Query 248 TCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCT 307
|||||||| |||| || |||||| | | ||||||| ||||| |||||||||||||||
Sbjct 1624817 TCTACACCCCTCATATCTCTTCACAGTGCCAGACTAGAATCAAGTTCAACAGGGTCTTCT 1624876
Query 308 TTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367
||||||||||| || ||||||||| ||||||||||||||||||| |||||||| || |||
Sbjct 1624877 TTCCCCGCTGAATCTGCCAAGCCCATTCCCTTGGCTGTGGTTTCACTAGATAGCAGGTAG 1624936
Query 368 GGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTT 427
||||||||||||||| | ||||||| |||||||||||||||| |||||||||
Sbjct 1624937 GGACAGTGGGAATCT--------CCTTCATGCATGTCACTAATTAGATGATGAGGCATTT 1624988
Query 428 GGCTA 432
|||||
Sbjct 1624989 GGCTA 1624993
>seq14
Length=18393167
Score = 228 bits (252), Expect = 3e-57
Identities = 197/245 (80%), Gaps = 17/245 (7%)
Strand=Plus/Plus
Query 197 aaaCGATAAGGGTAGTGGTATTTCACTT--GCGCCGAAACGG-------CTCCCACTTAT 247
|||||||||| ||||||||||||||| | ||| | || ||| ||||||
Sbjct 2670279 AAACGATAAGCGTAGTGGTATTTCACCAAGGTGCCCATCTGGATGGGGCCTCTGACTTAT 2670338
Query 248 TCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCT 307
|||||||| |||| || |||||| | | ||||||| ||||| |||||||||||||||
Sbjct 2670339 TCTACACCCCTCATATCTCTTCACAGTGCCAGACTAGAATCAAGTTCAACAGGGTCTTCT 2670398
Query 308 TTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367
||||||||||| || ||||||||| ||||||||||||||||||| |||||||| || |||
Sbjct 2670399 TTCCCCGCTGAATCTGCCAAGCCCATTCCCTTGGCTGTGGTTTCACTAGATAGCAGGTAG 2670458
Query 368 GGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTT 427
||||||||||||||| | ||||||| |||||||||||||||| |||||||||
Sbjct 2670459 GGACAGTGGGAATCT--------CCTTCATGCATGTCACTAATTAGATGATGAGGCATTT 2670510
Query 428 GGCTA 432
|||||
Sbjct 2670511 GGCTA 2670515
>seq529
Length=2907794
Score = 165 bits (182), Expect = 3e-38
Identities = 96/99 (97%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1979671 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCACGCTTCATTGAATTTCTTCACTTTG 1979612
Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|||||||||||||||||||||||||||||||||||||||
Sbjct 1979611 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 1979573
>seq34
Length=18891512
Score = 86.0 bits (94), Expect = 2e-14
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
||||||||||||||||||| |||| ||| |||||| | | ||||||||||||| ||||
Sbjct 9238181 CTCCCACTTATTCTACACCCCTCATGTCTCTTCACAGTGCCAGACTAGAGTCAAGTTCAA 9238240
Query 297 CAGGGTCTTCTT 308
|||| |||||||
Sbjct 9238241 CAGGCTCTTCTT 9238252
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635046650944
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |