Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq527 434 3e-119 seq2823 271 2e-70 seq7858 228 3e-57 seq14 228 3e-57 seq529 165 3e-38 seq34 86.0 2e-14 >seq527 Length=1699385 Score = 434 bits (480), Expect = 3e-119 Identities = 261/275 (95%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 259 CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 318 || ||| |||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 1256918 CATGTCTCTTCACAGTGCCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 1256859 Query 319 TTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGA 378 ||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1256858 TTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAGGTAGGGACAGTGGGA 1256799 Query 379 ATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 438 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1256798 ATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 1256739 Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1256738 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACAT 1256679 Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||| ||||||||| Sbjct 1256678 TCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 1256644 >seq2823 Length=178462 Score = 271 bits (300), Expect = 2e-70 Identities = 215/257 (84%), Gaps = 12/257 (5%) Strand=Plus/Plus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCC----------GAAACGG- 236 ||||| | |||||||||| |||||||||||||||| | | | || | || Sbjct 63276 TAAGTGAGGAAACGATAAGAGTAGTGGTATTTCACTGGTGGCTCCCTTTCGTGACAGGGG 63335 Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||| |||||||||| ||| || ||| | | ||||||||| |||||||| Sbjct 63336 CTCCCACTTATTCCACACCTCTCATGTCTCTTTACAGTGCCAGACTAGAGTTAAGCTCAA 63395 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCC-GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 || ||||||||||||| |||||| | |||||||| |||||||||||||||||||| ||| Sbjct 63396 CATGGTCTTCTTTCCCAACTGATTTCTGCCAAGCCTGTTCCCTTGGCTGTGGTTTCACTA 63455 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 ||||| || |||||||||| ||||||||||| ||||||||||||| |||||||||||||| Sbjct 63456 GATAGCAGGTAGGGACAGTAGGAATCTCGTTCATCCATTCATGCGTGTCACTAATTAGAT 63515 Query 416 GACGAGGCATTTGGCTA 432 ||||||||||||||||| Sbjct 63516 GACGAGGCATTTGGCTA 63532 Score = 95.1 bits (104), Expect = 4e-17 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| |||| ||||||| |||| |||| |||||||||||||| || | Sbjct 62432 CTTCTGCTCCGTGGGAGGTTTCTGTCCTCCCTGAGCTTGCCTTAGGACACCTGTGTAACC 62491 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 62492 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCACTGTC 62538 >seq7858 Length=1962973 Score = 228 bits (252), Expect = 3e-57 Identities = 197/245 (80%), Gaps = 17/245 (7%) Strand=Plus/Plus Query 197 aaaCGATAAGGGTAGTGGTATTTCACTT--GCGCCGAAACGG-------CTCCCACTTAT 247 |||||||||| ||||||||||||||| | ||| | || ||| |||||| Sbjct 1624757 AAACGATAAGCGTAGTGGTATTTCACCAAGGTGCCCATCTGGATGGGGCCTCTGACTTAT 1624816 Query 248 TCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCT 307 |||||||| |||| || |||||| | | ||||||| ||||| ||||||||||||||| Sbjct 1624817 TCTACACCCCTCATATCTCTTCACAGTGCCAGACTAGAATCAAGTTCAACAGGGTCTTCT 1624876 Query 308 TTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367 ||||||||||| || ||||||||| ||||||||||||||||||| |||||||| || ||| Sbjct 1624877 TTCCCCGCTGAATCTGCCAAGCCCATTCCCTTGGCTGTGGTTTCACTAGATAGCAGGTAG 1624936 Query 368 GGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTT 427 ||||||||||||||| | ||||||| |||||||||||||||| ||||||||| Sbjct 1624937 GGACAGTGGGAATCT--------CCTTCATGCATGTCACTAATTAGATGATGAGGCATTT 1624988 Query 428 GGCTA 432 ||||| Sbjct 1624989 GGCTA 1624993 >seq14 Length=18393167 Score = 228 bits (252), Expect = 3e-57 Identities = 197/245 (80%), Gaps = 17/245 (7%) Strand=Plus/Plus Query 197 aaaCGATAAGGGTAGTGGTATTTCACTT--GCGCCGAAACGG-------CTCCCACTTAT 247 |||||||||| ||||||||||||||| | ||| | || ||| |||||| Sbjct 2670279 AAACGATAAGCGTAGTGGTATTTCACCAAGGTGCCCATCTGGATGGGGCCTCTGACTTAT 2670338 Query 248 TCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCT 307 |||||||| |||| || |||||| | | ||||||| ||||| ||||||||||||||| Sbjct 2670339 TCTACACCCCTCATATCTCTTCACAGTGCCAGACTAGAATCAAGTTCAACAGGGTCTTCT 2670398 Query 308 TTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367 ||||||||||| || ||||||||| ||||||||||||||||||| |||||||| || ||| Sbjct 2670399 TTCCCCGCTGAATCTGCCAAGCCCATTCCCTTGGCTGTGGTTTCACTAGATAGCAGGTAG 2670458 Query 368 GGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTT 427 ||||||||||||||| | ||||||| |||||||||||||||| ||||||||| Sbjct 2670459 GGACAGTGGGAATCT--------CCTTCATGCATGTCACTAATTAGATGATGAGGCATTT 2670510 Query 428 GGCTA 432 ||||| Sbjct 2670511 GGCTA 2670515 >seq529 Length=2907794 Score = 165 bits (182), Expect = 3e-38 Identities = 96/99 (97%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 1979671 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCACGCTTCATTGAATTTCTTCACTTTG 1979612 Query 495 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||| Sbjct 1979611 ACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 1979573 >seq34 Length=18891512 Score = 86.0 bits (94), Expect = 2e-14 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||||||| |||| ||| |||||| | | ||||||||||||| |||| Sbjct 9238181 CTCCCACTTATTCTACACCCCTCATGTCTCTTCACAGTGCCAGACTAGAGTCAAGTTCAA 9238240 Query 297 CAGGGTCTTCTT 308 |||| ||||||| Sbjct 9238241 CAGGCTCTTCTT 9238252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635046650944