Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq445 131 1e-25 seq39 98.7 8e-16 seq40 95.1 1e-14 >seq445 Length=552131 Score = 131 bits (144), Expect = 1e-25 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| |||||||| ||||||| |||||||| |||||||||| ||||| || Sbjct 60567 GGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTG 60508 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 ||||| ||||| ||||| ||||||||||| | |||||| || ||||| ||||| || Sbjct 60507 GTTACTTTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCCAGTCTCTGTCTG 60448 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 |||||||||||||| | ||| || | ||||||||| Sbjct 60447 AGACTCAATGATGGCATACCACAGCTGCTGAGCCTTCACC 60408 >seq39 Length=16255708 Score = 98.7 bits (108), Expect = 8e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || || | |||||||| |||||| | || || ||||| |||||||| ||||||| Sbjct 10357034 TGGAGCGATTTACTCAGGAGGTCCAAGTGACTGAAGCCCGTTGCTTCTACGGTTTCCAGA 10356975 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 |||||||||| || | ||||| || ||||||||| | | || || || ||||||| Sbjct 10356974 TTGCCATGGAAAACATACACTCTGAAATGTACAGTCTGTTGATTGACACCTACATCA 10356918 >seq40 Length=23490330 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || || | ||||| || ||||| | || || ||||| |||||||| ||||||| Sbjct 14324569 TGGAGCGATTTACTCAGGAAGTCCAAGTAACTGAAGCCCGTTGCTTCTACGGATTCCAGA 14324510 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 |||||||||| || ||||||| || ||||||||| | | || || || ||||||| Sbjct 14324509 TTGCCATGGAAAACATCCACTCCGAAATGTACAGTCTGTTGATTGACACTTACATCA 14324453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397522560213920