Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq7 93.3 2e-17 seq5 93.3 2e-17 seq4 93.3 2e-17 seq376 89.7 3e-16 seq16 87.8 1e-15 seq534 77.0 2e-12 seq1094 75.2 6e-12 >seq7 Length=74282399 Score = 93.3 bits (102), Expect = 2e-17 Identities = 92/118 (78%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||||||||| || |||| || | | |||| ||| |||| ||||| |||| Sbjct 4256 GAACCCAAAGACTCGTGGTTTCCCGCACGCTGCCCGGCGGGTCATGGGAATAACGCCGCC 4197 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | |||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 4196 GGATCGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 4139 >seq5 Length=72500376 Score = 93.3 bits (102), Expect = 2e-17 Identities = 92/118 (78%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||||||||| || |||| || | | |||| ||| |||| ||||| |||| Sbjct 825626 GAACCCAAAGACTCGTGGTTTCCCGCACGCTGCCCGGCGGGTCATGGGAATAACGCCGCC 825685 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | |||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 825686 GGATCGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 825743 Score = 87.8 bits (96), Expect = 1e-15 Identities = 91/118 (77%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||||||||| || |||| | | | |||| ||| |||| ||||| |||| Sbjct 53178402 GAACCCAAAGACTCGTGGTTTCCTGCACGCTGCCCGGCGGGTCATGGGAATAACGCCGCC 53178461 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | |||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 53178462 GGATCGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 53178519 >seq4 Length=78093715 Score = 93.3 bits (102), Expect = 2e-17 Identities = 92/118 (78%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||||||||| || |||| || | | |||| ||| |||| ||||| |||| Sbjct 55759158 GAACCCAAAGACTCGTGGTTTCCCGCACGCTGCCCGGCGGGTCATGGGAATAACGCCGCC 55759099 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | |||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 55759098 GGATCGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 55759041 Score = 93.3 bits (102), Expect = 2e-17 Identities = 92/118 (78%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 |||||||||||||| || |||| || | | |||| ||| |||| ||||| |||| Sbjct 59648391 GAACCCAAAGACTTGTGGTTTCCCGCACGCTGCCCGGCGGGTCATGGGAATAACGCCGCC 59648332 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||| | |||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 59648331 GGATAGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 59648274 Score = 75.2 bits (82), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGG-TGCCGAGCGAGTCAAAATGATAA-CATCG 57 || |||| ||||| || |||| || || | |||| ||| |||| |||| | || Sbjct 77550362 GAGCCCAGAGACTCGTGGTTTCCCGCAACGCTGCCCGGCGGGTCATGGGAATAAACGCCG 77550421 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || |||| | |||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 77550422 CCGGATCGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 77550481 Score = 75.2 bits (82), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGG-TGCCGAGCGAGTCAAAATGATAA-CATCG 57 || |||| ||||| || |||| || || | |||| ||| |||| |||| | || Sbjct 77561913 GAGCCCAGAGACTCGTGGTTTCCCGCAACGCTGCCCGGCGGGTCATGGGAATAAACGCCG 77561972 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || |||| | |||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 77561973 CCGGATCGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 77562032 Score = 73.4 bits (80), Expect = 2e-11 Identities = 57/68 (84%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 50 TAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATC 109 |||| |||| |||| | |||||||| ||||||||| ||||||||||||||||||| Sbjct 55728846 TAACGCCGCCGGATCGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGATC 55728905 Query 110 GTCTTCGA 117 |||||||| Sbjct 55728906 GTCTTCGA 55728913 Score = 73.4 bits (80), Expect = 2e-11 Identities = 57/68 (84%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 50 TAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATC 109 |||| |||| |||| | |||||||| ||||||||| ||||||||||||||||||| Sbjct 55778392 TAACGCCGCCGGATCGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGATC 55778333 Query 110 GTCTTCGA 117 |||||||| Sbjct 55778332 GTCTTCGA 55778325 Score = 73.4 bits (80), Expect = 2e-11 Identities = 57/68 (84%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 50 TAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATC 109 |||| |||| |||| | |||||||| ||||||||| ||||||||||||||||||| Sbjct 55794589 TAACGCCGCCGGATCGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGATC 55794530 Query 110 GTCTTCGA 117 |||||||| Sbjct 55794529 GTCTTCGA 55794522 Score = 73.4 bits (80), Expect = 2e-11 Identities = 57/68 (84%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 50 TAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATC 109 |||| |||| |||| | |||||||| ||||||||| ||||||||||||||||||| Sbjct 55810149 TAACGCCGCCGGATCGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGATC 55810090 Query 110 GTCTTCGA 117 |||||||| Sbjct 55810089 GTCTTCGA 55810082 Score = 73.4 bits (80), Expect = 2e-11 Identities = 57/68 (84%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 50 TAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATC 109 |||| |||| |||| | |||||||| ||||||||| ||||||||||||||||||| Sbjct 68568520 TAACGCCGCCGGATCGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGATC 68568579 Query 110 GTCTTCGA 117 |||||||| Sbjct 68568580 GTCTTCGA 68568587 >seq376 Length=20886 Score = 89.7 bits (98), Expect = 3e-16 Identities = 92/118 (78%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||||||||| || |||| || | | |||| ||| |||| ||||| |||| Sbjct 11268 GAACCCAAAGACTCGTGGTTTCCCGCACGCTGCCCGGCGGGTCATGGGAATAACGCCGCC 11327 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | |||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 11328 GGATCGCGGGTCGGCAT-GTTTACGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 11384 Score = 84.2 bits (92), Expect = 1e-14 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||||||||| || |||| || | | |||| ||| |||| ||||| |||| Sbjct 17635 GAACCCAAAGACTCGTGGTTTCCCGCACGCTGCCCGGCGGGTCATGGGAATAACGCCGCC 17694 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | |||||||| ||||||||| ||| ||||||||||||||||||||||| Sbjct 17695 GGATCGCGGGTCGGCATCGTTTACGGTCGGAACT-CGACGGTATCTGATCGTCTTCGA 17751 >seq16 Length=55266484 Score = 87.8 bits (96), Expect = 1e-15 Identities = 91/118 (77%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 ||||||||||||| || |||| || | | |||| ||| |||| ||||| |||| Sbjct 15786464 GAACCCAAAGACTCATGGTTTCCCGCACGCTGCCCGGCGGGTCATGGGAATAACGCCGCC 15786523 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | |||||||| ||||||||| |||| |||||||||||||||||||||| Sbjct 15786524 GGATCGCGGGTCGGCATTGTTTACGGTCGGAACTATGACGGTATCTGATCGTCTTCGA 15786581 >seq534 Length=14336 Score = 77.0 bits (84), Expect = 2e-12 Identities = 92/122 (75%), Gaps = 5/122 (4%) Strand=Plus/Plus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGG-TGCCGAGCGAGTCAAAATGATA---ACAT 55 || |||| ||||| || |||| ||||| | |||| ||| ||||| | | || Sbjct 8335 GAGCCCAGAGACTCGTGGTTTCCCGTAACGCTGCCTGGCGGGTCAACAAGGGGGGGACGC 8394 Query 56 CGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 |||| |||| | |||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 8395 CGCCAGATCGCGGGTCGGCATGGTTTACGGTCGGAACTACGACGGTATCTGATCGTCTTC 8454 Query 116 GA 117 || Sbjct 8455 GA 8456 >seq1094 Length=204803 Score = 75.2 bits (82), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGG-TGCCGAGCGAGTCAAAATGATAA-CATCG 57 || |||| ||||| || |||| || || | |||| ||| |||| |||| | || Sbjct 481 GAGCCCAGAGACTCGTGGTTTCCCGCAACGCTGCCCGGCGGGTCATGGGAATAAACGCCG 540 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || |||| | |||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 541 CCGGATCGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 600 Score = 75.2 bits (82), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTT-TGATTTCTCGTAAGG-TGCCGAGCGAGTCAAAATGATAA-CATCG 57 || |||| ||||| || |||| || || | |||| ||| |||| |||| | || Sbjct 12032 GAGCCCAGAGACTCGTGGTTTCCCGCAACGCTGCCCGGCGGGTCATGGGAATAAACGCCG 12091 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || |||| | |||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 12092 CCGGATCGCGGGTCGGCATCGTTTACGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 12151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278394980970