Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq7 141 4e-32 seq5 141 4e-32 seq534 136 2e-30 seq4 132 2e-29 seq1094 113 2e-23 >seq7 Length=74282399 Score = 141 bits (156), Expect = 4e-32 Identities = 94/103 (91%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| Sbjct 5858 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAGCG 5917 Query 61 CCGAATCCCCGCCCCGCG-GTGGGGCGCGGGACATGTGGCGTA 102 |||||||||||||||| | |||||| |||| |||||||||| Sbjct 5918 CCGAATCCCCGCCCCGTGCCAGGGGCGAGGGAAATGTGGCGTA 5960 >seq5 Length=72500376 Score = 141 bits (156), Expect = 4e-32 Identities = 94/103 (91%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| Sbjct 824081 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAGCG 824022 Query 61 CCGAATCCCCGCCCCGCG-GTGGGGCGCGGGACATGTGGCGTA 102 |||||||||||||||| | |||||| |||| |||||||||| Sbjct 824021 CCGAATCCCCGCCCCGTGCCAGGGGCGAGGGAAATGTGGCGTA 823979 Score = 141 bits (156), Expect = 4e-32 Identities = 94/103 (91%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| Sbjct 835728 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAGCG 835669 Query 61 CCGAATCCCCGCCCCGCG-GTGGGGCGCGGGACATGTGGCGTA 102 |||||||||||||||| | |||||| |||| |||||||||| Sbjct 835668 CCGAATCCCCGCCCCGTGCCAGGGGCGAGGGAAATGTGGCGTA 835626 >seq534 Length=14336 Score = 136 bits (150), Expect = 2e-30 Identities = 93/104 (89%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| Sbjct 6858 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAGCG 6799 Query 61 CCGAATCCCCGCCCCGCGG--TGGGGCGCGGGACATGTGGCGTA 102 ||||||||||||||| | | |||||| |||| ||||||||| Sbjct 6798 CCGAATCCCCGCCCCTCTGCCAGGGGCGAGGGAGGTGTGGCGTA 6755 >seq4 Length=78093715 Score = 132 bits (146), Expect = 2e-29 Identities = 92/103 (89%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| Sbjct 55727074 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAGCG 55727015 Query 61 CCGAATCCCCGCCCCGCG-GTGGGGCGCGGGACATGTGGCGTA 102 |||||||||||||| | | |||| | |||| |||||||||| Sbjct 55727014 CCGAATCCCCGCCCTGTGACAGGGGTGAGGGAAATGTGGCGTA 55726972 Score = 132 bits (146), Expect = 2e-29 Identities = 92/103 (89%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| Sbjct 55780165 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAGCG 55780224 Query 61 CCGAATCCCCGCCCCGCG-GTGGGGCGCGGGACATGTGGCGTA 102 |||||||||||||| | | |||| | |||| |||||||||| Sbjct 55780225 CCGAATCCCCGCCCTGTGACAGGGGTGAGGGAAATGTGGCGTA 55780267 Score = 132 bits (146), Expect = 2e-29 Identities = 92/103 (89%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| Sbjct 55796361 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAGCG 55796420 Query 61 CCGAATCCCCGCCCCGCG-GTGGGGCGCGGGACATGTGGCGTA 102 |||||||||||||| | | |||| | |||| |||||||||| Sbjct 55796421 CCGAATCCCCGCCCTGTGACAGGGGTGAGGGAAATGTGGCGTA 55796463 Score = 132 bits (146), Expect = 2e-29 Identities = 92/103 (89%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| Sbjct 55811921 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAGCG 55811980 Query 61 CCGAATCCCCGCCCCGCG-GTGGGGCGCGGGACATGTGGCGTA 102 |||||||||||||| | | |||| | |||| |||||||||| Sbjct 55811981 CCGAATCCCCGCCCTGTGACAGGGGTGAGGGAAATGTGGCGTA 55812023 Score = 132 bits (146), Expect = 2e-29 Identities = 92/103 (89%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| Sbjct 68566749 GGAAAAGAAACTAACCAGGATTCCCTCAGTAGCGGCGAGCGAAGAGGGAAGAGCCCAGCG 68566690 Query 61 CCGAATCCCCGCCCCGCG-GTGGGGCGCGGGACATGTGGCGTA 102 |||||||||||||| | | |||| | |||| |||||||||| Sbjct 68566689 CCGAATCCCCGCCCTGTGACAGGGGTGAGGGAAATGTGGCGTA 68566647 Score = 113 bits (124), Expect = 2e-23 Identities = 88/104 (85%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||| |||| |||||||| ||||| ||||||| ||| |||||| || |||||| Sbjct 77560267 GGAAAAGAAACCAACCGGGATTCCCCCAGTAGCGGCGAGCGAAGAGGGAAAAGTCCAGCG 77560208 Query 61 CCGAATCCCCGCCCCGCGG--TGGGGCGCGGGACATGTGGCGTA 102 ||||||||||||||| | | ||||| ||||| ||||||||| Sbjct 77560207 CCGAATCCCCGCCCCTCTGCCGAGGGCGAGGGACCTGTGGCGTA 77560164 >seq1094 Length=204803 Score = 113 bits (124), Expect = 2e-23 Identities = 88/104 (85%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||| |||| |||||||| ||||| ||||||| ||| |||||| || |||||| Sbjct 10386 GGAAAAGAAACCAACCGGGATTCCCCCAGTAGCGGCGAGCGAAGAGGGAAAAGTCCAGCG 10327 Query 61 CCGAATCCCCGCCCCGCGG--TGGGGCGCGGGACATGTGGCGTA 102 ||||||||||||||| | | ||||| ||||| ||||||||| Sbjct 10326 CCGAATCCCCGCCCCTCTGCCGAGGGCGAGGGACCTGTGGCGTA 10283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230395846320