Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq7 91.5 9e-17 seq5 91.5 9e-17 seq1094 86.0 4e-15 seq4 86.0 4e-15 seq534 82.4 5e-14 >seq7 Length=74282399 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 4827 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 4770 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 4769 TAAT-CAACGCAAGCT 4755 >seq5 Length=72500376 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 825055 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 825112 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 825113 TAAT-CAACGCAAGCT 825127 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 836702 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 836759 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 836760 TAAT-CAACGCAAGCT 836774 >seq1094 Length=204803 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||| |||| | || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 11460 CTCACTGAGCCGCT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 11517 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 11518 TAAT-CAACGCAAGCT 11532 >seq4 Length=78093715 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||| |||| | || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 77561341 CTCACTGAGCCGCT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 77561398 Query 109 TAATACAACGCAAGCT 124 |||| ||||||||||| Sbjct 77561399 TAAT-CAACGCAAGCT 77561413 >seq534 Length=14336 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 ||||| ||||| | || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 7761 CTCACCAAGCCGCT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 7818 Query 109 TAATACAACGCAAGCT 124 || | ||||||||||| Sbjct 7819 TAGT-CAACGCAAGCT 7833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300794577140