Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq376 78.8 1e-12 seq7 77.0 4e-12 seq5 77.0 4e-12 seq4 77.0 4e-12 >seq376 Length=20886 Score = 78.8 bits (86), Expect = 1e-12 Identities = 90/121 (74%), Gaps = 14/121 (12%) Strand=Plus/Plus Query 5 TCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC 64 || ||||||| ||||||||| || | ||||||||| |||||||| ||| |||||| Sbjct 17895 TCCAGAAACCCACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCGGTATTC 17953 Query 65 ----------GGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTG 114 ||||| |||||||||||||||||||||||| |||| ||||| | || | Sbjct 17954 AGCGGCGGCTGGGCG---GCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCCCGG 18010 Query 115 G 115 | Sbjct 18011 G 18011 Score = 77.0 bits (84), Expect = 4e-12 Identities = 85/113 (75%), Gaps = 14/113 (12%) Strand=Plus/Plus Query 5 TCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC 64 || ||||||| ||||||||| || | ||||||||| |||||||| ||| |||||| Sbjct 11528 TCCAGAAACCCACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGGGGTATTC 11586 Query 65 ----------GGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 ||||| |||||||||||||||||||||||| |||| ||||| Sbjct 11587 AGCGGCGGCTGGGCG---GCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 11636 >seq7 Length=74282399 Score = 77.0 bits (84), Expect = 4e-12 Identities = 85/113 (75%), Gaps = 14/113 (12%) Strand=Plus/Minus Query 5 TCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC 64 || ||||||| ||||||||| || | ||||||||| |||||||| ||| |||||| Sbjct 3995 TCCAGAAACCCACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCGGTATTC 3937 Query 65 ----------GGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 ||||| |||||||||||||||||||||||| |||| ||||| Sbjct 3936 AGCGGCGGCTGGGCG---GCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 3887 >seq5 Length=72500376 Score = 77.0 bits (84), Expect = 4e-12 Identities = 85/113 (75%), Gaps = 14/113 (12%) Strand=Plus/Plus Query 5 TCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC 64 || ||||||| ||||||||| || | ||||||||| |||||||| ||| |||||| Sbjct 825887 TCCAGAAACCCACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCGGTATTC 825945 Query 65 ----------GGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 ||||| |||||||||||||||||||||||| |||| ||||| Sbjct 825946 AGCGGCGGCTGGGCG---GCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 825995 Score = 77.0 bits (84), Expect = 4e-12 Identities = 85/113 (75%), Gaps = 14/113 (12%) Strand=Plus/Plus Query 5 TCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC 64 || ||||||| ||||||||| || | ||||||||| |||||||| ||| |||||| Sbjct 53178663 TCCAGAAACCCACAAAATAGAACCGGA-GTCCTATTCCATTATTCCTAGCTGCGGTATTC 53178721 Query 65 ----------GGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 ||||| |||||||||||||||||||||||| |||| ||||| Sbjct 53178722 AGCGGCGGCTGGGCG---GCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 53178771 >seq4 Length=78093715 Score = 77.0 bits (84), Expect = 4e-12 Identities = 85/113 (75%), Gaps = 14/113 (12%) Strand=Plus/Minus Query 5 TCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC 64 || ||||||| ||||||||| || | ||||||||| |||||||| ||| |||||| Sbjct 59648130 TCCAGAAACCCACAAAATAGAACCGGA-GTCCTATTCGATTATTCCTAGCTGCGGTATTC 59648072 Query 65 ----------GGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 ||||| |||||||||||||||||||||||| |||| ||||| Sbjct 59648071 AGTGGCGGCTGGGCG---GCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 59648022 Score = 73.4 bits (80), Expect = 5e-11 Identities = 84/113 (74%), Gaps = 14/113 (12%) Strand=Plus/Minus Query 5 TCTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTC 64 || ||||||| ||||||||| || | ||| ||||| |||||||| ||| |||||| Sbjct 55758897 TCCAGAAACCCACAAAATAGAACCGGA-GTCTTATTCCATTATTCCTAGCTGCGGTATTC 55758839 Query 65 ----------GGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAA 107 ||||| |||||||||||||||||||||||| |||| ||||| Sbjct 55758838 AGCGGCGGCTGGGCG---GCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAA 55758789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595188911982