Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq376 98.7 1e-18 seq7 96.9 4e-18 seq5 96.9 4e-18 seq4 96.9 4e-18 seq2 93.3 4e-17 >seq376 Length=20886 Score = 98.7 bits (108), Expect = 1e-18 Identities = 136/189 (72%), Gaps = 10/189 (5%) Strand=Plus/Minus Query 5 CCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAG--------GCCTTTGCTCG 56 || || | ||||||||||||||||||||| ||||||||||| ||| ||| | Sbjct 18011 CCCGGGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGCCCAGCCGCCGCT-G 17953 Query 57 AATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGA 116 ||||| | | |||||||| ||||||||| | |||||||||||||| ||||||| | | Sbjct 17952 AATACCGCAGCTAGGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAA 17894 Query 117 CCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAA 176 || | ||||| | | ||| | |||||| | ||||| | | ||||||| Sbjct 17893 CCCGGGGCCATGATTGAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAA 17834 Query 177 ATTCTTGGA 185 ||||||||| Sbjct 17833 ATTCTTGGA 17825 Score = 96.9 bits (106), Expect = 4e-18 Identities = 131/181 (72%), Gaps = 10/181 (6%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAG--------GCCTTTGCTCGAATACATT 64 ||||||||||||||||||||| ||||||||||| ||| ||| |||||| Sbjct 11636 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGCCCAGCCGCCGCT-GAATACCCC 11578 Query 65 ACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGT 124 | | |||||||| ||||||||| | |||||||||||||| ||||||| | ||| | Sbjct 11577 AGCTAGGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGC 11519 Query 125 AATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGG 184 ||||| | | ||| | |||||| | ||||| | | ||||||||||||||| Sbjct 11518 CATGATTGAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGG 11459 Query 185 A 185 | Sbjct 11458 A 11458 >seq7 Length=74282399 Score = 96.9 bits (106), Expect = 4e-18 Identities = 131/181 (72%), Gaps = 10/181 (6%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAG--------GCCTTTGCTCGAATACATT 64 ||||||||||||||||||||| ||||||||||| ||| ||| |||||| Sbjct 3887 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGCCCAGCCGCCGCT-GAATACCGC 3945 Query 65 ACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGT 124 | | |||||||| ||||||||| | |||||||||||||| ||||||| | ||| | Sbjct 3946 AGCTAGGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGC 4004 Query 125 AATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGG 184 ||||| | | ||| | |||||| | ||||| | | ||||||||||||||| Sbjct 4005 CATGATTGAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGG 4064 Query 185 A 185 | Sbjct 4065 A 4065 >seq5 Length=72500376 Score = 96.9 bits (106), Expect = 4e-18 Identities = 131/181 (72%), Gaps = 10/181 (6%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAG--------GCCTTTGCTCGAATACATT 64 ||||||||||||||||||||| ||||||||||| ||| ||| |||||| Sbjct 825995 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGCCCAGCCGCCGCT-GAATACCGC 825937 Query 65 ACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGT 124 | | |||||||| ||||||||| | |||||||||||||| ||||||| | ||| | Sbjct 825936 AGCTAGGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGC 825878 Query 125 AATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGG 184 ||||| | | ||| | |||||| | ||||| | | ||||||||||||||| Sbjct 825877 CATGATTGAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGG 825818 Query 185 A 185 | Sbjct 825817 A 825817 Score = 96.9 bits (106), Expect = 4e-18 Identities = 131/181 (72%), Gaps = 10/181 (6%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAG--------GCCTTTGCTCGAATACATT 64 ||||||||||||||||||||| ||||||||||| ||| ||| |||||| Sbjct 53178771 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGCCCAGCCGCCGCT-GAATACCGC 53178713 Query 65 ACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGT 124 | | |||||||| ||||||||| | |||||||||||||| ||||||| | ||| | Sbjct 53178712 AGCTAGGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGC 53178654 Query 125 AATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGG 184 ||||| | | ||| | |||||| | ||||| | | ||||||||||||||| Sbjct 53178653 CATGATTGAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGG 53178594 Query 185 A 185 | Sbjct 53178593 A 53178593 >seq4 Length=78093715 Score = 96.9 bits (106), Expect = 4e-18 Identities = 131/181 (72%), Gaps = 10/181 (6%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAG--------GCCTTTGCTCGAATACATT 64 ||||||||||||||||||||| ||||||||||| ||| ||| |||||| Sbjct 55758789 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCGCCCAGCCGCCGCT-GAATACCGC 55758847 Query 65 ACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGT 124 | | |||||||| ||||| ||| | |||||||||||||| ||||||| | ||| | Sbjct 55758848 AGCTAGGAATAATGGAATAAGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGGGC 55758906 Query 125 AATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGG 184 ||||| | | ||| | |||||| | ||||| | | | ||||||||||||||| Sbjct 55758907 CATGATTGAGAGGGACGGCCGGGGGCATTCGTATTGCGTCGCTAGAGGTGAAATTCTTGG 55758966 Query 185 A 185 | Sbjct 55758967 A 55758967 Score = 95.1 bits (104), Expect = 1e-17 Identities = 131/183 (72%), Gaps = 14/183 (8%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC----------GAATACA 62 ||||||||||||||||||||| |||||||||||||| || | |||||| Sbjct 59648022 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC---GCCCAGCCGCCACTGAATACC 59648078 Query 63 TTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCC 122 | | |||||||| ||||||||| | |||||||||||||| ||||||| | ||| Sbjct 59648079 GCAGCTAGGAATAATCGAATAGGAC-TCCGGTTCTATTTTGTGGGTTTCTGGAACCCGGG 59648137 Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 | ||||| | | ||| | |||||| | ||||| | | ||||||||||||| Sbjct 59648138 GCCATGATTGAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTT 59648197 Query 183 GGA 185 ||| Sbjct 59648198 GGA 59648200 Score = 75.2 bits (82), Expect = 1e-11 Identities = 128/183 (70%), Gaps = 11/183 (6%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGG--CCTTTGCTC------GAATACATT 64 ||||||||||||||||||||| |||||| ||||| | ||| | |||||| Sbjct 55729168 TTTACTTTGAAAAAATTAGAGTGTTCAAGGCAGGGCCGACTGCGCCCTTATGAATACCCC 55729109 Query 65 ACCATGGAATAATAGAATAGGACGTGCGGTTCTATTT--TGTAGGTTTCTAGGACCGCCC 122 | | |||||||| ||||||||| ||||||||||| ||| |||||| | ||| Sbjct 55729108 AGCTAGGAATAATGGAATAGGAC-CCCGGTTCTATTTTCTGTGGGTTTCCGGAACCCGGG 55729050 Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 | ||||| | | ||| | |||||| | ||||| | | ||||||||||||| Sbjct 55729049 GCCATGATTGAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTT 55728990 Query 183 GGA 185 ||| Sbjct 55728989 GGA 55728987 Score = 75.2 bits (82), Expect = 1e-11 Identities = 128/183 (70%), Gaps = 11/183 (6%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGG--CCTTTGCTC------GAATACATT 64 ||||||||||||||||||||| |||||| ||||| | ||| | |||||| Sbjct 55778070 TTTACTTTGAAAAAATTAGAGTGTTCAAGGCAGGGCCGACTGCGCCCTTATGAATACCCC 55778129 Query 65 ACCATGGAATAATAGAATAGGACGTGCGGTTCTATTT--TGTAGGTTTCTAGGACCGCCC 122 | | |||||||| ||||||||| ||||||||||| ||| |||||| | ||| Sbjct 55778130 AGCTAGGAATAATGGAATAGGAC-CCCGGTTCTATTTTCTGTGGGTTTCCGGAACCCGGG 55778188 Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 | ||||| | | ||| | |||||| | ||||| | | ||||||||||||| Sbjct 55778189 GCCATGATTGAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTT 55778248 Query 183 GGA 185 ||| Sbjct 55778249 GGA 55778251 Score = 75.2 bits (82), Expect = 1e-11 Identities = 128/183 (70%), Gaps = 11/183 (6%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGG--CCTTTGCTC------GAATACATT 64 ||||||||||||||||||||| |||||| ||||| | ||| | |||||| Sbjct 55794267 TTTACTTTGAAAAAATTAGAGTGTTCAAGGCAGGGCCGACTGCGCCCTTATGAATACCCC 55794326 Query 65 ACCATGGAATAATAGAATAGGACGTGCGGTTCTATTT--TGTAGGTTTCTAGGACCGCCC 122 | | |||||||| ||||||||| ||||||||||| ||| |||||| | ||| Sbjct 55794327 AGCTAGGAATAATGGAATAGGAC-CCCGGTTCTATTTTCTGTGGGTTTCCGGAACCCGGG 55794385 Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 | ||||| | | ||| | |||||| | ||||| | | ||||||||||||| Sbjct 55794386 GCCATGATTGAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTT 55794445 Query 183 GGA 185 ||| Sbjct 55794446 GGA 55794448 Score = 75.2 bits (82), Expect = 1e-11 Identities = 128/183 (70%), Gaps = 11/183 (6%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGG--CCTTTGCTC------GAATACATT 64 ||||||||||||||||||||| |||||| ||||| | ||| | |||||| Sbjct 55809827 TTTACTTTGAAAAAATTAGAGTGTTCAAGGCAGGGCCGACTGCGCCCTTATGAATACCCC 55809886 Query 65 ACCATGGAATAATAGAATAGGACGTGCGGTTCTATTT--TGTAGGTTTCTAGGACCGCCC 122 | | |||||||| ||||||||| ||||||||||| ||| |||||| | ||| Sbjct 55809887 AGCTAGGAATAATGGAATAGGAC-CCCGGTTCTATTTTCTGTGGGTTTCCGGAACCCGGG 55809945 Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 | ||||| | | ||| | |||||| | ||||| | | ||||||||||||| Sbjct 55809946 GCCATGATTGAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTT 55810005 Query 183 GGA 185 ||| Sbjct 55810006 GGA 55810008 Score = 75.2 bits (82), Expect = 1e-11 Identities = 129/183 (70%), Gaps = 11/183 (6%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAG-GCC-TTTGCTC------GAATACATT 64 ||||||||||||||||||||| |||||| |||| ||| ||| | |||||| Sbjct 68568842 TTTACTTTGAAAAAATTAGAGTGTTCAAGGCAGTGCCGACTGCGCCCTTATGAATACCCC 68568783 Query 65 ACCATGGAATAATAGAATAGGACGTGCGGTTCTATTT--TGTAGGTTTCTAGGACCGCCC 122 | | |||||||| ||||||||| ||||||||||| ||| |||||| | ||| Sbjct 68568782 AGCTAGGAATAATGGAATAGGAC-CCCGGTTCTATTTTCTGTGGGTTTCCGGAACCCGGG 68568724 Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 | ||||| | | ||| | |||||| | ||||| | | ||||||||||||| Sbjct 68568723 GCCATGATTGAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTT 68568664 Query 183 GGA 185 ||| Sbjct 68568663 GGA 68568661 >seq2 Length=59640629 Score = 93.3 bits (102), Expect = 4e-17 Identities = 131/181 (72%), Gaps = 11/181 (6%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTT--------TGCTCGAATACATT 64 |||||||||||||||||| ||||||||||||||||| | |||| ||||| Sbjct 44759426 TTTACTTTGAAAAAATTATAGCGTTCAAAGCAGGCCGTCCAGCCACTGCT-GAATAGCGC 44759484 Query 65 ACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGT 124 | | |||||||| ||||||||| | ||||||||||||||| ||||| | | | | | Sbjct 44759485 AGCTAGGAATAATGGAATAGGAC-TCTGGTTCTATTTTGTAGATTTCT-GAAACCCGGGC 44759542 Query 125 AATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGG 184 ||||| | | |||| | | |||| | ||||| | | | || |||||||||||| Sbjct 44759543 CATGATTGAGAGGGATGGCCAGGGGCATTCGTATTACAAAGCTAGAGATGAAATTCTTGG 44759602 Query 185 A 185 | Sbjct 44759603 A 44759603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511990461920