Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq4 176 9e-42 seq1094 165 2e-38 seq534 165 2e-38 seq7 161 2e-37 seq5 161 2e-37 >seq4 Length=78093715 Score = 176 bits (194), Expect = 9e-42 Identities = 196/258 (76%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || |||| |||||||||||||||| Sbjct 55728517 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGACTGAG-CAATAACAGGTCTGTG 55728460 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | ||||| || | | Sbjct 55728459 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAACGTGTGCCTAC 55728400 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| |||||| | | |||| | ||||| | |||| | | |||| Sbjct 55728399 CCTGCGCCGAGAGGCGCGGGTAACCCGTTGAAACCCGCTCGTGATTGGGACCGGGGATTG 55728340 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||| |||| | ||| |||||||||| || ||||||||| ||||||||| ||| ||||| Sbjct 55728339 CAACTATTTCCCTTGAACGAGGAATTCCCAGTAAGCGCTGGTCATCAGCCAGCGCTGATT 55728280 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 55728279 AAGTCCCTGCCCTTTGTA 55728262 Score = 176 bits (194), Expect = 9e-42 Identities = 196/258 (76%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || |||| |||||||||||||||| Sbjct 55778721 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGACTGAG-CAATAACAGGTCTGTG 55778778 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | ||||| || | | Sbjct 55778779 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAACGTGTGCCTAC 55778838 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| |||||| | | |||| | ||||| | |||| | | |||| Sbjct 55778839 CCTGCGCCGAGAGGCGCGGGTAACCCGTTGAAACCCGCTCGTGATTGGGACCGGGGATTG 55778898 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||| |||| | ||| |||||||||| || ||||||||| ||||||||| ||| ||||| Sbjct 55778899 CAACTATTTCCCTTGAACGAGGAATTCCCAGTAAGCGCTGGTCATCAGCCAGCGCTGATT 55778958 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 55778959 AAGTCCCTGCCCTTTGTA 55778976 Score = 176 bits (194), Expect = 9e-42 Identities = 196/258 (76%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || |||| |||||||||||||||| Sbjct 55794918 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGACTGAG-CAATAACAGGTCTGTG 55794975 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | ||||| || | | Sbjct 55794976 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAACGTGTGCCTAC 55795035 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| |||||| | | |||| | ||||| | |||| | | |||| Sbjct 55795036 CCTGCGCCGAGAGGCGCGGGTAACCCGTTGAAACCCGCTCGTGATTGGGACCGGGGATTG 55795095 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||| |||| | ||| |||||||||| || ||||||||| ||||||||| ||| ||||| Sbjct 55795096 CAACTATTTCCCTTGAACGAGGAATTCCCAGTAAGCGCTGGTCATCAGCCAGCGCTGATT 55795155 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 55795156 AAGTCCCTGCCCTTTGTA 55795173 Score = 176 bits (194), Expect = 9e-42 Identities = 196/258 (76%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || |||| |||||||||||||||| Sbjct 55810478 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGACTGAG-CAATAACAGGTCTGTG 55810535 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | ||||| || | | Sbjct 55810536 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAACGTGTGCCTAC 55810595 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| |||||| | | |||| | ||||| | |||| | | |||| Sbjct 55810596 CCTGCGCCGAGAGGCGCGGGTAACCCGTTGAAACCCGCTCGTGATTGGGACCGGGGATTG 55810655 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||| |||| | ||| |||||||||| || ||||||||| ||||||||| ||| ||||| Sbjct 55810656 CAACTATTTCCCTTGAACGAGGAATTCCCAGTAAGCGCTGGTCATCAGCCAGCGCTGATT 55810715 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 55810716 AAGTCCCTGCCCTTTGTA 55810733 Score = 176 bits (194), Expect = 9e-42 Identities = 196/258 (76%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || |||| |||||||||||||||| Sbjct 68568191 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGACTGAG-CAATAACAGGTCTGTG 68568134 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | ||||| || | | Sbjct 68568133 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAACGTGTGCCTAC 68568074 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| ||| |||||| | | |||| | ||||| | |||| | | |||| Sbjct 68568073 CCTGCGCCGAGAGGCGCGGGTAACCCGTTGAAACCCGCTCGTGATTGGGACCGGGGATTG 68568014 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||| |||| | ||| |||||||||| || ||||||||| ||||||||| ||| ||||| Sbjct 68568013 CAACTATTTCCCTTGAACGAGGAATTCCCAGTAAGCGCTGGTCATCAGCCAGCGCTGATT 68567954 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 68567953 AAGTCCCTGCCCTTTGTA 68567936 Score = 165 bits (182), Expect = 2e-38 Identities = 196/259 (76%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || |||| |||||||||||||||| Sbjct 77561637 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGACTGAG-CAATAACAGGTCTGTG 77561580 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | ||||| || | | Sbjct 77561579 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAACGTGTGCCTAC 77561520 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTC-GTGCTGGGGATAGAGCATT 249 ||| |||| ||| |||||| | ||| ||| | | | ||| |||||| | | ||| Sbjct 77561519 CCTGCGCCGACAGGCGCGGGTAACCC-GTTGAACCCCGCCCGTGATGGGGACCGGGGATT 77561461 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | || |||| | | |||||||||| || ||||||||| ||||||||| |||||||| Sbjct 77561460 GAAACTATTTCCCGAGAACGAGGAATTCCCAGTAAGCGCAGGTCATCAGCTTGCGTTGAT 77561401 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 77561400 TAAGTCCCTGCCCTTTGTA 77561382 Score = 102 bits (112), Expect = 2e-19 Identities = 150/206 (73%), Gaps = 5/206 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || |||| |||||||||||||||| Sbjct 77550086 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGACTGAG-CAATAACAGGTCTGTG 77550029 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | ||||| || | | Sbjct 77550028 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAACGTGTGCCTAC 77549969 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG-TCGTGCTGGGGATAGAGCATT 249 ||| |||| ||| |||||| | ||| ||| | | |||| |||||| | | ||| Sbjct 77549968 CCTGCGCCGACAGGCGCGGGTAA-CCCGTTGAACCCCGCCCGTGATGGGGACCGGGGATT 77549910 Query 250 GCAATTATTGCTCTTCAACGAGGAAT 275 | || |||| | | |||||||||| Sbjct 77549909 GAAACTATTTCCCGAGAACGAGGAAT 77549884 >seq1094 Length=204803 Score = 165 bits (182), Expect = 2e-38 Identities = 196/259 (76%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || |||| |||||||||||||||| Sbjct 11756 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGACTGAG-CAATAACAGGTCTGTG 11699 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | ||||| || | | Sbjct 11698 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAACGTGTGCCTAC 11639 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTC-GTGCTGGGGATAGAGCATT 249 ||| |||| ||| |||||| | ||| ||| | | | ||| |||||| | | ||| Sbjct 11638 CCTGCGCCGACAGGCGCGGGTAACCC-GTTGAACCCCGCCCGTGATGGGGACCGGGGATT 11580 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | || |||| | | |||||||||| || ||||||||| ||||||||| |||||||| Sbjct 11579 GAAACTATTTCCCGAGAACGAGGAATTCCCAGTAAGCGCAGGTCATCAGCTTGCGTTGAT 11520 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 11519 TAAGTCCCTGCCCTTTGTA 11501 Score = 102 bits (112), Expect = 2e-19 Identities = 150/206 (73%), Gaps = 5/206 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || |||| |||||||||||||||| Sbjct 205 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGACTGAG-CAATAACAGGTCTGTG 148 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | ||||| || | | Sbjct 147 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAACGTGTGCCTAC 88 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG-TCGTGCTGGGGATAGAGCATT 249 ||| |||| ||| |||||| | ||| ||| | | |||| |||||| | | ||| Sbjct 87 CCTGCGCCGACAGGCGCGGGTAA-CCCGTTGAACCCCGCCCGTGATGGGGACCGGGGATT 29 Query 250 GCAATTATTGCTCTTCAACGAGGAAT 275 | || |||| | | |||||||||| Sbjct 28 GAAACTATTTCCCGAGAACGAGGAAT 3 >seq534 Length=14336 Score = 165 bits (182), Expect = 2e-38 Identities = 201/268 (75%), Gaps = 6/268 (2%) Strand=Plus/Minus Query 64 GTCGCCGGCTTCTTAGAGGGACTATCGGCTC--AAGCCGATGGAAGTTTGAGGCAATAAC 121 |||| | ||||||||||||||| | ||| ||||| | | || ||| ||||| | Sbjct 8066 GTCGTCAGCTTCTTAGAGGGACAAGTGGCAGGAAAGCC-ACGCGAGACAGAG-CAATAGC 8009 Query 122 AGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACG 181 ||||||||||||||||||||||| | |||| ||||||| |||||| || | ||||| Sbjct 8008 AGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGAGCTACAATGGGCGGATCAACG 7949 Query 182 AGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTC-GTGCTGGGGA 240 || | | ||| |||| |||| ||||| | | ||| ||| | ||| |||||||||| Sbjct 7948 TGTGCCTACCCTGCGCCGAGAGGTGTGGGTGACCC-GTTGAACCCCGTCCGTGCTGGGGA 7890 Query 241 TAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCA 300 | | |||| || | || | | |||||||||| || ||||||||| ||||||||| Sbjct 7889 CCGGGGATTGAAACTGTTTCCCGAGAACGAGGAATTCCCAGTAAGCGCAGGTCATCAGCT 7830 Query 301 CGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||| || |||||||||||||||| Sbjct 7829 TGCGTTGACTAAGTCCCTGCCCTTTGTA 7802 >seq7 Length=74282399 Score = 161 bits (178), Expect = 2e-37 Identities = 195/259 (75%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || | ||| |||||||||||||||| Sbjct 4531 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 4588 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | ||||| || | | Sbjct 4589 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAACGTGTGCCTAC 4648 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG-TCGTGCTGGGGATAGAGCATT 249 ||| |||| ||| |||||| | ||| ||| | | ||||| | |||| | | || Sbjct 4649 CCTGCGCCGAGAGGCGCGGGTAA-CCCGTTGAACCCCGCTCGTGATTGGGACTGGGGCTT 4707 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | || | || | | |||||||||||| || ||||||||| ||||| ||| |||||||| Sbjct 4708 GAAACTGTTTCCCATCAACGAGGAATTCCCAGTAAGCGCAGGTCATAAGCTTGCGTTGAT 4767 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 4768 TAAGTCCCTGCCCTTTGTA 4786 >seq5 Length=72500376 Score = 161 bits (178), Expect = 2e-37 Identities = 195/259 (75%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | | || | ||| |||||||||||||||| Sbjct 825351 CTTCTTAGAGGGACAAGTGGCGTTCAGCC-ACGCGAGATGGAG-CAATAACAGGTCTGTG 825294 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||| || | ||||| || | | Sbjct 825293 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACAATGGGCGGATCAACGTGTGCCTAC 825234 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG-TCGTGCTGGGGATAGAGCATT 249 ||| |||| ||| |||||| | ||| ||| | | ||||| | |||| | | || Sbjct 825233 CCTGCGCCGAGAGGCGCGGGTAACCC-GTTGAACCCCGCTCGTGATTGGGACTGGGGCTT 825175 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 | || | || | | |||||||||||| || ||||||||| ||||| ||| |||||||| Sbjct 825174 GAAACTGTTTCCCATCAACGAGGAATTCCCAGTAAGCGCAGGTCATAAGCTTGCGTTGAT 825115 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 825114 TAAGTCCCTGCCCTTTGTA 825096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947181785344