Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1094 118 2e-24 seq4 118 2e-24 seq43 113 7e-23 seq534 109 9e-22 seq376 109 9e-22 seq99 104 4e-20 seq899 100 5e-19 seq20 100 5e-19 seq7 100 5e-19 seq5 100 5e-19 >seq1094 Length=204803 Score = 118 bits (130), Expect = 2e-24 Identities = 96/114 (84%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| | |||||| |||| || |||| || || | Sbjct 6573 GTACGAGAGGAACCGCGGG-TTCAGAC-ATTTGGTTCGTGCGCTTGGCTGAGGAGCCACT 6516 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||| ||||||||| |||||||| |||||||||||||||||||||||| Sbjct 6515 GGCGCGAAGCCACCATCTGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 6462 >seq4 Length=78093715 Score = 118 bits (130), Expect = 2e-24 Identities = 96/114 (84%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| | |||||| |||| || |||| || || | Sbjct 77556454 GTACGAGAGGAACCGCGGG-TTCAGAC-ATTTGGTTCGTGCGCTTGGCTGAGGAGCCACT 77556397 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||| ||||||||| |||||||| |||||||||||||||||||||||| Sbjct 77556396 GGCGCGAAGCCACCATCTGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 77556343 Score = 113 bits (124), Expect = 7e-23 Identities = 95/114 (83%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| | |||||| |||| || |||| || || | Sbjct 55762518 GTACGAGAGGAACCGCGGG-TTCAGAC-ATTTGGTTCGTGCGCTTGGCTGAGGAGCCACT 55762575 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||| |||||||| |||||||| |||||||||||||||||||||||| Sbjct 55762576 GGCGCGAAGCCACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 55762629 Score = 113 bits (124), Expect = 7e-23 Identities = 95/114 (83%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| | |||||| |||| || |||| || || | Sbjct 55783843 GTACGAGAGGAACCGCGGG-TTCAGAC-ATTTGGTTCGTGCGCTTGGCTGAGGAGCCACT 55783900 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||| |||||||| |||||||| |||||||||||||||||||||||| Sbjct 55783901 GGCGCGAAGCCACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 55783954 Score = 113 bits (124), Expect = 7e-23 Identities = 95/114 (83%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| | |||||| |||| || |||| || || | Sbjct 55800039 GTACGAGAGGAACCGCGGG-TTCAGAC-ATTTGGTTCGTGCGCTTGGCTGAGGAGCCACT 55800096 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||| |||||||| |||||||| |||||||||||||||||||||||| Sbjct 55800097 GGCGCGAAGCCACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 55800150 Score = 113 bits (124), Expect = 7e-23 Identities = 95/114 (83%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| | |||||| |||| || |||| || || | Sbjct 55828171 GTACGAGAGGAACCGCGGG-TTCAGAC-ATTTGGTTCGTGCGCTTGGCTGAGGAGCCACT 55828228 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||| |||||||| |||||||| |||||||||||||||||||||||| Sbjct 55828229 GGCGCGAAGCCACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 55828282 Score = 111 bits (122), Expect = 3e-22 Identities = 95/115 (83%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||||| |||| || |||| || || | Sbjct 53400122 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTCGTGCGCTTGGCTGAGGAGCCACT 53400065 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCA 115 | |||||||| ||||||||| |||||||| |||||||||||||||||||||| || Sbjct 53400064 GGCGCGAAGCCACCATCTGCGGGATTATGACTGAACGCCTCTAAGTCAGAATTCA 53400010 Score = 109 bits (120), Expect = 9e-22 Identities = 94/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| | |||||| |||| || |||| || || | Sbjct 34311797 GTACGAGAGGAACCGCGGG-TTCAGAC-ATTTGGTTCGTGCGCTTGGCTGAAGAGCCACT 34311854 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||| |||||||| |||||||| |||||||||||||||||||||||| Sbjct 34311855 GGTGCGAAGCCACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 34311908 Score = 109 bits (120), Expect = 9e-22 Identities = 94/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| | |||||| |||| || |||| || || | Sbjct 68563073 GTACGAGAGGAACCGCGGG-TTCAGAC-ATTTGGTTCGTGCGCTTGGCTGAGGAGCCACT 68563016 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||| |||||||| |||||||| ||||||||||||||||||||| || Sbjct 68563015 GGCGCGAAGCCACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAACCC 68562962 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| | |||| | |||| || | || || || | Sbjct 31009201 GTACGAGAGGAACCGCGGG-TTCAGAC-ATTTGGCTCGTGCGCTTGGCCGAGGAGCCACT 31009144 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||| |||||||| |||||||| |||||||||||||||||||||||| Sbjct 31009143 GGCGCGAAGCCACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 31009090 >seq43 Length=1460 Score = 113 bits (124), Expect = 7e-23 Identities = 95/114 (83%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| | |||||| |||| || |||| || || | Sbjct 977 GTACGAGAGGAACCGCGGG-TTCAGAC-ATTTGGTTCGTGCGCTTGGCTGAGGAGCCACT 1034 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||| |||||||| |||||||| |||||||||||||||||||||||| Sbjct 1035 GGCGCGAAGCCACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 1088 >seq534 Length=14336 Score = 109 bits (120), Expect = 9e-22 Identities = 94/114 (82%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || |||||| ||| | | |||| || |||| ||| || | Sbjct 4659 GTACGAGAGGAACCGTGGG-TTCAGAC--ATTTGGTGCTGCGCTTGGCTGAGCAGCCACT 4603 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||||| |||| ||| |||||||||||||||||||||||| Sbjct 4602 GGCGCGAAGCTACCATCTGCGGGATAATGACTGAACGCCTCTAAGTCAGAATCC 4549 >seq376 Length=20886 Score = 109 bits (120), Expect = 9e-22 Identities = 94/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | |||||| |||| || |||| || || | Sbjct 4976 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTTCGTGCGCTTGGCTGAGGAGCCACT 4919 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 4918 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 4865 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || |||| || || | Sbjct 14272 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCGTGTGCTTGGCTGAGGAGCCACT 14215 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 14214 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 14161 >seq99 Length=5511 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || |||| || || | Sbjct 2007 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCGTGTGCTTGGCTGAGGAGCCACT 2064 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 2065 GGTGCGAAGCTACCATCTGCGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 2118 >seq899 Length=4138 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || |||| || || | Sbjct 1004 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCGTGTGCTTGGCTGAGGAGCCACT 1061 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 1062 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 1115 >seq20 Length=55201332 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || |||| || || | Sbjct 55169215 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCGTGTGCTTGGCTGAGGAGCCACT 55169158 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 55169157 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 55169104 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||| ||||| | |||||| | |||||| ||| ||| ||| || || | Sbjct 55007600 GTATGAGAGGGACCGCTGG-TTCAGAC-ATCTGGTTTGTGCACTTGTGTGAGGAGCCAAT 55007543 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | || |||||| |||||| |||||||||||||||||| |||||||||| || Sbjct 55007542 GGTGCAAAGCTAATATCTGCAAGATTATGGCTGAACGCCTATAAGTCAGAACCC 55007489 >seq7 Length=74282399 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || |||| || || | Sbjct 9586 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCGTGTGCTTGGCTGAGGAGCCACT 9643 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 9644 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 9697 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||| ||||| | |||||| | |||||| ||| ||| ||| || || | Sbjct 166397 GTATGAGAGGGACCGCAGG-TTCAGAC-ATCTGGTTTGTGCACTTGTGTGAGGAGCCAAT 166454 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | || |||||| |||||| |||||||||||||||||| |||||||||| || Sbjct 166455 GGTGCAAAGCTAATATCTGCAAGATTATGGCTGAACGCCTATAAGTCAGAACCC 166508 >seq5 Length=72500376 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || |||| || || | Sbjct 820416 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCGTGTGCTTGGCTGAGGAGCCACT 820359 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 820358 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 820305 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| || | || |||| || || | Sbjct 832063 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCGTGTGCTTGGCTGAGGAGCCACT 832006 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 832005 GGTGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 831952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819184739072