Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq21 125 6e-24 seq20 86.0 5e-12 seq19 86.0 5e-12 >seq21 Length=45934066 Score = 125 bits (138), Expect = 6e-24 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| ||||| || ||||||| ||| ||||| |||||||||| ||||| || Sbjct 30778853 GGTGTACTCAACAATCTCTGTGCACAAATTGCTGCATTTGATGGTGCCCAGGTTCTGCTG 30778912 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || |||||||| ||||| || || ||||| | |||||| || |||||||||||| || Sbjct 30778913 GTTGCTCTTGCGGTTGCAGGCGTCTTTGTAAAGCATGTATGGTGTGCCGGTCTCAGTCTG 30778972 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 ||||| |||||||| | |||||| Sbjct 30778973 AGACTCGATGATGGCATACCAAAG 30778996 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/131 (76%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || |||||||| |||||||||||||| || ||||| | |||| |||||||| | Sbjct 30779644 CATGAAGAGATCAGGAATCCAGAGGGCGTAAAACAGATCTCTGGCTCTCTGCTCCTCTTT 30779703 Query 66400 GCC-GTGATTTTTGCGCAAG-TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGG 66457 || ||| | ||| ||| || ||||| || || ||||| |||||| || |||||| Sbjct 30779704 ACCAGTGTTCTTT--TTAAGCTCTAGGAAGTCGAAAATGTCAAAATGCCAAGGCTCCAGG 30779761 Query 66458 TAGATGGCGAA 66468 || ||||| || Sbjct 30779762 TACATGGCAAA 30779772 >seq20 Length=55201332 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| |||||| | |||||||| || ||| | || || || || ||||| |||||||||| Sbjct 29495599 TGGAGCGTTTCACTCAGGAGGTCCAGGTGACTGAAGCCCGCTGCTTCTATGGCTTCCAGA 29495540 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 | || ||||| || ||||||| || |||||||| | | || || || ||||| Sbjct 29495539 TAGCAATGGAAAACATCCACTCAGAAATGTACAGCCTGTTGATTGACACCTACAT 29495485 >seq19 Length=48449771 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| |||||| | |||||||| || ||| | || || || || ||||| |||||||||| Sbjct 47568012 TGGAGCGTTTCACTCAGGAGGTCCAGGTGACTGAAGCCCGCTGCTTCTATGGCTTCCAGA 47567953 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 | || ||||| || ||||||| || |||||||| | | || || || ||||| Sbjct 47567952 TAGCAATGGAAAACATCCACTCAGAAATGTACAGCCTGTTGATTGACACCTACAT 47567898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397558682372720