Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_028482.1 Length=11877 Score E Sequences producing significant alignments: (Bits) Value seq20 82.4 6e-12 >seq20 Length=55201332 Score = 82.4 bits (90), Expect = 6e-12 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 2221 TTAGGTCATAAGATTAAAATTCTGGATAGTTACGGATCCGAGACTTACTTCAATTTCTCC 2280 || || || || || |||| |||||||||| ||||| ||| | ||| ||| ||||| | Sbjct 11822423 TTCGGGCAAAACATGAAAACGGTGGATAGTTATGGATCGGAGGCGTACATCAGTTTCTGC 11822482 Query 2281 AAAACTGCTTCAGTCGGATATATAGAACTCCCTCAGACGTTCCGTAAGATTCAGAAATGC 2340 |||| ||| ||||| | | | ||| | || || | | | || || ||||||||| Sbjct 11822483 AAAAATGCGTCAGTGTGCAGTGTTGAAATGCCCCAAGGGGTGAGGAAAATCCAGAAATGC 11822542 Query 2341 TATGGTGCAAATAATGCCTTCATACCAACAATGGACGAGTATATCGCCAGCA-CGTTCAG 2399 ||||| || | ||| || ||| | || ||| | || || || | | || || | ||||| Sbjct 11822543 TATGGCGCCACTAACGCATTCCTCCCGACACTAGATGATTA-CTTGTCATCAGCCTTCAG 11822601 Query 2400 TAATGCACA 2408 |||||| || Sbjct 11822602 TAATGCTCA 11822610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37890380271252