Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Danio_20rerio_20[refseq_20GCF_5F000002035.6_202017-05-09] 1,923 sequences; 1,679,203,469 total letters Query= NC_033168.1 Length=11270 Score E Sequences producing significant alignments: (Bits) Value seq20 111 1e-20 seq17 98.7 7e-17 seq1093 95.1 9e-16 seq4 95.1 9e-16 >seq20 Length=55201332 Score = 111 bits (122), Expect = 1e-20 Identities = 409/629 (65%), Gaps = 30/629 (5%) Strand=Plus/Plus Query 1865 TGGAAAGTGCTTTATGTTAATTTCGATGTTTCAGGGTGGTGTTCTAATTTCAGACATGAA 1924 |||||||| | || |||| |||||||| || || |||||| |||||||| |||||| Sbjct 11822006 TGGAAAGTCTTGTACATTAACTTCGATGTATCCGGTTGGTGTGGCAATTTCAGGCATGAA 11822065 Query 1925 ACTGTTCATCCCATAGCCCATGACATTTTGGATAAATATTATCAGACTGGAGAttttttt 1984 || || | || | ||| || ||||| | ||| || || ||| ||||| Sbjct 11822066 ACAGTGGAGCCGTTGTTTGCTGATATATTGGACACTGCATATG-GAGTGAAGAACTTTTT 11822124 Query 1985 G-GAAAAACACAATTGGCATACGAACATGGGCTATTCTATATCCCTAAACAAGATGGATC 2043 | || || || |||| || || | ||| | ||||| | || | ||| ||| | Sbjct 11822125 CCGTAAGACTCAGCTGGCCTATGAGAAAGGGTTCTTCTACCTTCCGGATTCAGAAGGAAC 11822184 Query 2044 AGGTGCTTACCACTGGGAAGGGCAGTTAGGGGGAGTGGAGGGGCTGAATCAAGATACATG 2103 |||| |||||||||| || || ||| | ||||| | |||||| | || || Sbjct 11822185 ------TTACTACTGGGAAGGACAACACGGTGGAATTGAGGGATTAAATCAATACACGTG 11822238 Query 2104 GATGATGGTATACATACCACAGATGAGGTTAGCTCTACATGAATTTCAAGC-ACACATGT 2162 |||| || ||| ||||| |||||||||| |||| | ||||| | || |||| | Sbjct 11822239 GATGTTGACATATATACCGCAGATGAGGTACTCTCTTCGGGAATT-CGGGCTACACTATT 11822297 Query 2163 TTGTAATGGCTTATGGAGACGATTATAAGGCCGCTTTATTAATTCCGCCCGATCAGGCTA 2222 | || ||||| || || ||| | || ||||| || | ||||||| ||| | ||| Sbjct 11822298 TCGTGATGGCATACGGTGACTACTACAAGGCTGCGCTCCTAATTCCACCCAACCAG---- 11822353 Query 2223 ATCGAGATATCACTACATTGAAGAA--CAAAATTATAGAGGTGG--TGAGTAACGTGGCA 2278 | ||| || || | | || || | | |||| | |||| | ||| | Sbjct 11822354 --CAAGACATTGATA--TGGCCGACTTCAGACGGCGTGTGGTGAGCTCAGTAGC-TGGAA 11822408 Query 2279 CAG-----ACATGTTTTGCTCAAGATATGAAAGTTTTTGATAGTTATGGCTCAGAATGTT 2333 ||| || || | ||| | |||||| | ||||||||||| || || | Sbjct 11822409 CAGCGAAAACGCAGTTCGGGCAAAACATGAAAACGGTGGATAGTTATGGATCGGAGGCGT 11822468 Query 2334 TCATAAGCTTTTGTAAAAATGCATCAGTCCGTGGAGTAGAACTATCACAAGGCTTTAGAA 2393 ||| || || || |||||||| ||||| | | || ||| | | ||||| | || | Sbjct 11822469 ACATCAGTTTCTGCAAAAATGCGTCAGTGTGCAGTGTTGAAATGCCCCAAGGGGTGAGGA 11822528 Query 2394 AGATTCAAAAATGTTATGGGGCAAATAATGCTTTTCTTCC-ACATATAGATGATTACATC 2452 | || || ||||| ||||| || | ||| || || || || ||| ||||||||||| | Sbjct 11822529 AAATCCAGAAATGCTATGGCGCCACTAACGCATTCCTCCCGACA-CTAGATGATTACTTG 11822587 Query 2453 GCGTCTGCTTTCAGTAATTCTCACTCAGC 2481 | || || ||||||||| |||| || || Sbjct 11822588 TCATCAGCCTTCAGTAATGCTCATTCTGC 11822616 >seq17 Length=53461100 Score = 98.7 bits (108), Expect = 7e-17 Identities = 404/630 (64%), Gaps = 14/630 (2%) Strand=Plus/Minus Query 1856 TATAAGGGGTGGAAAGTGCTTTATGTTAATTTCGATGTTTCAGGGTGGTGTTCTAATTTC 1915 ||||||| ||| ||| || || |||| || ||||| || |||||||| |||||| Sbjct 41866393 TATAAGGATAGGAGAGTCCTATACATTAACTTTGATGTGTCTGGGTGGTGCGGCAATTTC 41866334 Query 1916 AGACATGAAACTGTTCATCCCATA-GCCCATGACATTTTGGATAAATATTATCAGACTGG 1974 |||||||| ||||| | || || || || |||||| | || |||| || | | Sbjct 41866333 AGACATGAGACTGTGGAACCTTTATGCTCA-GACATTCTTGACTCTGCTTATGGGA-TAG 41866276 Query 1975 AG-AtttttttGGAAAAACACAATTGGCATACGAACATGGGCTATTCTATATCCCTAAAC 2033 || |||| ||| | || || || | ||||| ||||| ||| | || ||| | || Sbjct 41866275 AGAATTTCTTTCGCAAGACGCAGCTTGCATATGAACAGGGGTTCTTTTATCTGCC----- 41866221 Query 2034 AAGATGGATCAGGTGCTTACCACTGGGAAGGGCAGTTAGGGGGAGTGGAGGGGCTGAATC 2093 ||| | ||| | || ||||| |||||||| || || | |||| | || | Sbjct 41866220 -AGACAGGCAAGGGACCTATCACTGAGAAGGGCAACAGGGTGGTATTGAGGAATTAAACC 41866162 Query 2094 AAGATACATGGATGATGGTATACATACCACAGATGAGGTTAGCTCTACATGAATTTCAAG 2153 || | || |||||| | ||||| | || ||||||| || || | |||||| | Sbjct 41866161 AATACACGTGGATGCTCACGTACATCTCCCAAATGAGGTATGCCCTTCGGGAATTT--GG 41866104 Query 2154 CACACAT--GTTTGTAATGGCTTATGGAGACGATTATAAGGCCGCTTTATTAATTCCGCC 2211 | |||| ||||| ||||| ||||| || || |||||||| || | ||| |||| || Sbjct 41866103 CCTACATTACTTTGTTATGGCGTATGGGGATGACTATAAGGCGGCACTGTTAGTTCCTCC 41866044 Query 2212 CGATCAGGCTAATCGAGATATCACTACATTGAAGAACAAAATTATAGAGGTGGTGAGTAA 2271 | ||| | ||| || | || | | ||| ||| || Sbjct 41866043 TAACCAGCAAGACATAGACATGGGGAATTTCCACCGTCGTGTCATACGCACAGTGGCCAA 41865984 Query 2272 CGTGGCACAGACATGTTTTGCTCAAGATATGAAAGTTTTTGATAGTTATGGCTCAGAATG 2331 | || | || |||| ||| |||||||| | |||| || ||||| |||||| Sbjct 41865983 CACAGCGAAAACTCAGTTTGGTCAGAATATGAAAAGTGTTGACAGCTATGGTTCAGAAGC 41865924 Query 2332 TTTCATAAGCTTTTGTAAAAATGCATCAGTCCGTGGAGTAGAACTATCACAAGGCTTTAG 2391 | || | ||||| || ||||| ||||| | || || ||| | ||||||| | | Sbjct 41865923 GTAAATCCGTTTTTGCAAGAATGCCTCAGTGTGCGGTGTGGAAATGCCACAAGGGGTGCG 41865864 Query 2392 AAAGATTCAAAAATGTTATGGGGCAAATAATGCTTTTCTTCCACATATAGATGATTACAT 2451 ||||| || || | || ||||||| ||||| || ||||| | |||| ||| | Sbjct 41865863 GAAGATACAGAAGTACTACGGGGCAACGAATGCATTCTTTCCAACCCTCAATGACTACCT 41865804 Query 2452 CGCGTCTGCTTTCAGTAATTCTCACTCAGC 2481 |||| || ||||| ||| |||| || || Sbjct 41865803 GTCGTCAGCATTCAGCAATGCTCATTCTGC 41865774 >seq1093 Length=245685 Score = 95.1 bits (104), Expect = 9e-16 Identities = 166/240 (69%), Gaps = 10/240 (4%) Strand=Plus/Minus Query 1980 tttttGGAAAAACACAATTGGCATACGAACATGGGCTATTCTATAT-CCCTAAACAAGAT 2038 |||| | || |||||| | ||||| ||||| || | |||||| | |||| | Sbjct 20309 TTTTCCGCAAGACACAACTTGCATAAGAACAAGGAATCTTCTATTTACCCT--------T 20258 Query 2039 GGATCA-GGTGCTTACCACTGGGAAGGGCAGTTAGGGGGAGTGGAGGGGCTGAATCAAGA 2097 | ||| || | || || |||||||||||| || || | |||||| |||| ||| | Sbjct 20257 GAGTCAAGGAACCTATCATTGGGAAGGGCAGCAGGGAGGCATCGAGGGGTTGAACCAATA 20198 Query 2098 TACATGGATGATGGTATACATACCACAGATGAGGTTAGCTCTACATGAATTTCAAGCACA 2157 ||| |||||| | ||||| || |||||||||| || || | || || ||| Sbjct 20197 TACCTGGATGCTTACGTACATCCCTCAGATGAGGTATGCGCTCCGAGAGTTCGGTTTACA 20138 Query 2158 CATGTTTGTAATGGCTTATGGAGACGATTATAAGGCCGCTTTATTAATTCCGCCCGATCA 2217 | ||||| |||||||| || || ||||| |||| || ||||||||||| || |||| Sbjct 20137 CTACTTTGTCATGGCTTACGGGGATGATTACAAGGTGGCATTATTAATTCCCCCAAATCA 20078 >seq4 Length=78093715 Score = 95.1 bits (104), Expect = 9e-16 Identities = 166/240 (69%), Gaps = 10/240 (4%) Strand=Plus/Minus Query 1980 tttttGGAAAAACACAATTGGCATACGAACATGGGCTATTCTATAT-CCCTAAACAAGAT 2038 |||| | || |||||| | ||||| ||||| || | |||||| | |||| | Sbjct 73614133 TTTTCCGCAAGACACAACTTGCATAAGAACAAGGAATCTTCTATTTACCCT--------T 73614082 Query 2039 GGATCA-GGTGCTTACCACTGGGAAGGGCAGTTAGGGGGAGTGGAGGGGCTGAATCAAGA 2097 | ||| || | || || |||||||||||| || || | |||||| |||| ||| | Sbjct 73614081 GAGTCAAGGAACCTATCATTGGGAAGGGCAGCAGGGAGGCATCGAGGGGTTGAACCAATA 73614022 Query 2098 TACATGGATGATGGTATACATACCACAGATGAGGTTAGCTCTACATGAATTTCAAGCACA 2157 ||| |||||| | ||||| || |||||||||| || || | || || ||| Sbjct 73614021 TACCTGGATGCTTACGTACATCCCTCAGATGAGGTATGCGCTCCGAGAGTTCGGTTTACA 73613962 Query 2158 CATGTTTGTAATGGCTTATGGAGACGATTATAAGGCCGCTTTATTAATTCCGCCCGATCA 2217 | ||||| |||||||| || || ||||| |||| || ||||||||||| || |||| Sbjct 73613961 CTACTTTGTCATGGCTTACGGGGATGATTACAAGGTGGCATTATTAATTCCCCCAAATCA 73613902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35948022292648