Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dicentrarchus_20labrax_20[genbank_20GCA_5F000689215.1_202014-04-09] 25 sequences; 675,917,103 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4 215 4e-51 seq8 123 2e-23 seq5 116 3e-21 >seq4 Length=27622843 Score = 215 bits (238), Expect = 4e-51 Identities = 977/1527 (64%), Gaps = 55/1527 (4%) Strand=Plus/Minus Query 65413 CAAGTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGA 65472 || |||| |||| | || || ||||| || || || || | ||| ||||||||| Sbjct 17920037 CAGGTGAGGATTCACGATCTGAAACTCTCCAGAGAGCACCCTGCGGGTGTAGATGTTGCT 17919978 Query 65473 CGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCAT 65532 ||| || ||| | ||| || ||||||| || || ||||| || || || || ||||| Sbjct 17919977 GGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCAT 17919918 Query 65533 GGGAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTC 65592 || || | || || ||| | || |||| | | | || || | || | | Sbjct 17919917 CGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGGACCTT 17919858 Query 65593 CCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCC 65652 ||||| | || ||| | | || | || | ||||| || | || ||| | || Sbjct 17919857 CCAGTCCAGCA--GGTCGGTGGGCGTCTTCTCC----CACATGTCGTACTGGAGGATGCC 17919804 Query 65653 GATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA 65712 | ||| |||| || || | | | ||||| || ||| || || | || Sbjct 17919803 CTTGCTGACCGGGGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCAGCCAGCTCGCA 17919744 Query 65713 GCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGC 65772 ||| | ||| || ||||| | || |||||||| || || | || || | || Sbjct 17919743 GCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGAGC 17919684 Query 65773 CTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCC 65832 |||| ||| ||| |||| | ||| |||| || | ||| |||| ||| || || || Sbjct 17919683 CTCAGGGCTTTCGAACGGGTAGCGCATGAGGATGAAGGCGTCTGCCAAACCCTGGACGCC 17919624 Query 65833 AATACCGATGGGACGATGACGCAAATTGGAACGTCTC-GCCTCAGGTACAGGGTAGTAAT 65891 || ||||| || | || ||| ||||| | |||| || ||||| || |||||||| | Sbjct 17919623 GATTCCGATCGGCCTGTGGCGCTTGTTGGA-CTTCTCCGCTTCAGGCACTGGGTAGTAGT 17919565 Query 65892 TGATATCGATAATGCGATTCAAATTGCGTGTC-ACCACATGCACGATACGTCGCAATTGT 65950 | || |||||||| ||||| || || | | || | | | | | || | Sbjct 17919564 TAATTTCGATAATCTTGTTCAAGTTTT-TGACGATTACTTTGGTCACAAATGCTAGTTTT 17919506 Query 65951 TCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCA 66010 | || |||||| | || || || ||| || ||| ||| || || Sbjct 17919505 TTAAAGTCAAAA------GTCCGCTCAGGGGTGACGTACATG------TTG---AGCGCG 17919461 Query 66011 AGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGC-GGTATACTCGACAATTTCGGT 66069 | || || || || || || |||| ||| || | || ||| ||||| || ||||| || Sbjct 17919460 ATGGAGGCCAGATTACACACCGCTACCTCATC-GTCGCTGGTGTACTCAACTATTTCTGT 17919402 Query 66070 GCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGC 66129 ||| || || |||| |||||||||| |||||| || || ||||| | ||||| || Sbjct 17919401 GCAGAGGTTGCTGCTTTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGC 17919342 Query 66130 ATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCA 66189 || ||||||| ||||||||| || ||||| || |||||||| || ||||||||||| Sbjct 17919341 GTCTTTGTACAGCATGTACGGCGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTGCCA 17919282 Query 66190 AAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTA-ATGTTC-GTAG 66247 | | ||||||||| || |||| |||| | ||| | |||| ||| Sbjct 17919281 CACCTGCTGAGCCTTCACCACGCGCTTGACCCTCCCTT--CCTTCTCATATGTGGTGTAA 17919224 Query 66248 AGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATC 66307 || | ||||| || ||||| ||| ||| | || |||| || ||||||||| Sbjct 17919223 AGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCAGGGCACTCGTTCGGACACATC 17919164 Query 66308 AGCGACCAATCACCATCCTGTTCTACACGACG--CATAAATAGATCAGGTATCCAGAGGG 66365 || ||||| || | || ||| ||| ||| || || || || ||||| | || Sbjct 17919163 AGAGACCAGTCTGTGT--TGCTCTCCACTCTCTTCATGAACAGGTCTGGGATCCACATGG 17919106 Query 66366 CGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGA 66425 ||||||| || || | || | |||||||| | ||| || || || || | || Sbjct 17919105 CGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCGGTGTTCTTCTTCAGCTCCAAGA 17919046 Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485 | ||||| | ||| ||||| || |||||||| ||||| |||| || | ||| Sbjct 17919045 AGTCAAACACATCGAAGTGCCAGGGCTCCAGGTACATGGCAAACGCTCCGGGCCTCTTGT 17918986 Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545 ||| || |||||||||||||| || |||||| |||| | || ||| || ||||||| Sbjct 17918985 TGCCTCCCTGGTCGACGTAGCGCGCAGTGTTGTTGTAGACTCTCAGCATGGGGACGAGCC 17918926 Query 66546 CGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACA 66604 |||| || ||||| ||||||||| |||| | ||| ||| | | || | || Sbjct 17918925 CGTTGGAGTTGCCGTTGGTGCCGGCGAT-ATAGCTCCCCGTCGATCTGATGCAGCTGACC 17918867 Query 66605 TTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAAT 66664 || ||||| || ||||||| ||| |||||| ||||| | || || | | Sbjct 17918866 GCCACGCCAATTCCCCCGGCCGACTTGGAGATGAGGGCACACTGCTTCAGCGTGTCGTAA 17918807 Query 66665 ATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA--TGAACTAAGTTGGGGTT 66722 ||||| || ||| ||| | || |||| || ||| |||| || || || || || Sbjct 17918806 ATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGAC--AGCTGTGGCC 17918749 Query 66723 TGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGT 66782 || || | || |||||| || || | |||||| || || | | |||| Sbjct 17918748 TGTTGGTTCCCGCGTTGAAGAGCGTAGGGGAAGCGTGGGTGAACCACTTCTCCGACAGCA 17918689 Query 66783 AATTGTACGTCTCGATGACAGCATCAATGT---TTTCGCCATGAATCCCGAGTGCACATC 66839 ||||||||||| ||| | || | |||| ||| | || ||||| | | || Sbjct 17918688 GGTTGTACGTCTCAATGGCTGCGTTGATGTCCGTTTTG---TGGATCCCAACAGATACTC 17918632 Query 66840 GCATCAGGAGGTATTGAGGCCGTTCGACCA----GCCGATCCTTGATATGCATTAAGTAG 66895 ||| || | || || || || ||| ||| |||| ||||| | || | |||| Sbjct 17918631 TCATGAGCATGTGCTGCGGACGCTCGGCCACTTTGCCG----TTGATCTTCAACAGGTAG 17918576 Query 66896 GAGCGTTCCAGGGTCTTGATACCAAAG 66922 || || ||||||||||||| || ||| Sbjct 17918575 GACCGCTCCAGGGTCTTGAACCCGAAG 17918549 >seq8 Length=22893611 Score = 123 bits (136), Expect = 2e-23 Identities = 101/123 (82%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||| ||||| ||| ||||||| | |||||||| || ||||||| Sbjct 22891605 TGGAGCGCTTCTCCCAGGAAGTGCAGGTGACGGAGGCCAGGTGTTTCTATGGTTTCCAGA 22891664 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | |||||| | || |||||||||| Sbjct 22891665 TCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTCCTCATCAACACCTACATCAGGG 22891724 Query 61376 AGC 61378 ||| Sbjct 22891725 AGC 22891727 >seq5 Length=28395245 Score = 116 bits (128), Expect = 3e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| ||||| || ||||||||||| ||| | |||||||||| |||||| || Sbjct 12623623 GTGTACTCTACAATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGG 12623682 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || ||||| | ||||| || |||||||| | |||||| || || |||||||| || Sbjct 12623683 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTACCGGTCTCTGTCTGA 12623742 Query 66170 GACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACC 66208 ||||||||||||| || ||| || | ||||||||| Sbjct 12623743 GACTCAATGATGGTGTACCACAGCTGCTGAGCCTTCACC 12623781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567878866000