Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2357 176 7e-42 seq3694 145 1e-32 seq746 127 3e-27 seq9942 73.4 6e-11 >seq2357 Length=19124 Score = 176 bits (194), Expect = 7e-42 Identities = 180/227 (79%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||||||||||||| |||| |||||||||| |||||| | Sbjct 459 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTTG-TGACCCGCGCTTACTGGGAATT-C 402 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||||| | || ||||||||| | ||||| ||||||| |||| | || Sbjct 401 CTCGTTGATGGGAAATAATTGCAATCCCCAATCCCAATCACGAGTGGGGTTCAGCGGGTT 342 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGC 178 ||||| ||| ||||| |||| | | || | ||| | || | ||||| |||||||||| Sbjct 341 ACCCGCGCCTCTCGGCGAAGGGTAGACACATGCTGA-TCCACTTAGTGTGGCGCGCGTGC 283 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||| | |||||||||||||||||||||||||||||| ||||| || Sbjct 282 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 237 >seq3694 Length=9729 Score = 145 bits (160), Expect = 1e-32 Identities = 174/228 (76%), Gaps = 10/228 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| |||||||||||| | |||| ||||| |||||||||||| | Sbjct 6073 GTACAAAGGGCAGGGACTTAGTCAACGCGAAATA-ATGATTCGCGTTTACTAGGAATT-C 6130 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATT 119 ||| || | || || |||| |||| | ||||| ||| || | |||| | |||| Sbjct 6131 CTCTTTCACGAAGAATAATTACAATCTCCGATCCCAATCGTGAAGGCTATTT--ATGATT 6188 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 || | ||| |||| ||| | || ||||| | || |||||||||||||| Sbjct 6189 CCCTGCTCCTTTCGGATCAGGA---ACGCTTTTTGAAGCCTCCATTGTAGCGCGCGTGCA 6245 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 |||| |||||||||||||||||||||||||||||||| ||| |||||| Sbjct 6246 GCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTC-AACTTC 6291 >seq746 Length=116330 Score = 127 bits (140), Expect = 3e-27 Identities = 171/235 (73%), Gaps = 21/235 (9%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||||||| |||||| |||||| | Sbjct 87452 GTACAAAGGGCAGGGACTTAATCAACGCG----------------CTTACTGGGAATT-C 87410 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||| ||||||| ||||| | || Sbjct 87409 CTCGTTCATGGGAAATAATTGCAATCCCCAATCCCTATCACGAGTGGTGTTCAACGGGTT 87350 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGC 178 |||| ||| || || |||| | | || || ||| | || ||||||| |||||||||| Sbjct 87349 ACCCACGCCTCTCTGCGAAGGGTAGACACACGCTGA-TCCACTCAGTGTGGCGCGCGTGC 87291 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 87290 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 87237 >seq9942 Length=4958163 Score = 73.4 bits (80), Expect = 6e-11 Identities = 161/231 (70%), Gaps = 9/231 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGC-TTACTAGGAATTT 59 ||||||||||||||||| | |||| || | ||| |||| | | ||||| |||| || Sbjct 3764233 GTACAAAGGGCAGGGACTTCATCAATGCAAACTT-ATGAAACAAACTTTACTGGGAA-TT 3764176 Query 60 CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGAT 118 |||| | | | || ||||||||| | ||| | ||||| | || || || | Sbjct 3764175 CCTCACTCACGGGGAATAATTGCAATCCCCAATCTCTATCACAAGTGTGGTTAAGCAGGT 3764116 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAG--ACTCGTTGAATACATCAGTGTAGCGCGCGT 176 ||||| |||| || | ||||| | || ||| ||| | |||||| | | | | Sbjct 3764115 TACCCACACCTCTCTGTGAAGGTTA-AGTCACTTATTGTTCCCCTCAGTGGGGTGAGTAT 3764057 Query 177 GCGGCCCAGAACATCTAAGGG-CATCACAGACCTGTTATTGCCTCAAACTT 226 ||||||| | ||||||||||| |||||| |||||||||| ||||| ||| Sbjct 3764056 GCGGCCCCGGACATCTAAGGGACATCACCTACCTGTTATT-TCTCAATCTT 3764007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751925838700