Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq3694 156 2e-35 seq9897 149 3e-33 seq336 145 3e-32 seq10164 129 2e-27 seq1181 122 4e-25 seq140 102 3e-19 >seq3694 Length=9729 Score = 156 bits (172), Expect = 2e-35 Identities = 113/130 (87%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 || ||||| || || |||||||||||||||||||||||||||| |||| ||||||| || Sbjct 4137 AGCGCATA--TGCTGAGACCCGAAAGATGGTGAACTATGCCTGAGTAGGATGAAGCCGGA 4080 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||||| || |||| || || |||||||||| ||||||| | |||||| Sbjct 4079 GGAAACTCTGGTGGAGGTCCGAAGCGTTTTTGACGTGCAAATCAATCGTCAGACTTGGGT 4020 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 4019 ATAGGGGCGA 4010 Score = 98.7 bits (108), Expect = 4e-18 Identities = 112/149 (75%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 38 ACGAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTA 96 ||||||||| ||||||| || |||| || || ||| | |||||| | | | ||| || Sbjct 4881 ACGAGTCGAATTGTTTGAGATTGCAATTCAAACATGTGTGGTAAACTCCATACAAAACTC 4822 Query 97 AATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 ||||| || |||||||||| | ||||| | || ||||| ||||||| |||||| Sbjct 4821 AATATAACGACGACACCGATAGCGAAGAAGTACCGCGAGGGAAAGTTGAAAAGGACTTTG 4762 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAATTG 185 ||||||||||||| || ||||||| || Sbjct 4761 AAAAGAGAGTTAAATAGGGCGTGAAACTG 4733 >seq9897 Length=2457536 Score = 149 bits (164), Expect = 3e-33 Identities = 102/115 (89%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1736339 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 1736280 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 1736279 GGCCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 1736225 >seq336 Length=502814 Score = 145 bits (160), Expect = 3e-32 Identities = 101/115 (88%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||| Sbjct 500589 GGACCCGAAAGATGGGGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 500648 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 500649 GGCCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 500703 >seq10164 Length=846354 Score = 129 bits (142), Expect = 2e-27 Identities = 99/116 (85%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 763733 GGACCCGAAATATGGTGAACTATGCCTGGGCAGGTCGAAGCCAGAGGAAACTCTGGTGGA 763674 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT-CAAATTTGGGTATAGGGGCGA 683 ||| || |||||| ||| |||||||||| |||| ||| ||||| ||||||||| Sbjct 763673 GGCCCGTAGCGGTCCTGAAGTGCAAATCGGTCGTCCAACCATGGGTTTAGGGGCGA 763618 >seq1181 Length=47698 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 7098 GAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 7039 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 7038 ACCGGCACGAGACCGATAGTCGACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGAAG 6979 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 6978 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 6939 >seq140 Length=644896 Score = 102 bits (112), Expect = 3e-19 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||| | |||||||| | |||||||||| |||||||||||||||| || |||||||||| Sbjct 406303 GACTCAAAAGATGGCGGACTATGCCTGGGCAGGGTGAAGCCAGAGGTAATTCTGGTGGAG 406244 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | | |||||| ||| |||||||||| ||| | ||||||||||||||| Sbjct 406243 GACCATAGCGGTCCTGTAGTGCAAATCGGTCGCTCGACCTGGGTATAGGGGCGA 406190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079781639000