Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq746 223 6e-56 seq3694 154 2e-35 seq9989 102 1e-19 seq2357 86.0 1e-14 >seq746 Length=116330 Score = 223 bits (246), Expect = 6e-56 Identities = 202/251 (80%), Gaps = 19/251 (8%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 87308 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 87250 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 || || | |||||| | |||| | |||||||||||||| | | || ||| | || Sbjct 87249 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGACCGCA--CG 87193 Query 136 ATGGGGC--------TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 ||||| || |||||| | ||||||||||||||||||||||||||||| Sbjct 87192 --GGGGCCGCGTAACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGAC 87135 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||| ||||||||||||||||||||||| | ||||||||||| Sbjct 87134 AAATCGCTCCACCAACTATGAACGGCCATGCACCACCACCCAGA-----AAGAAAGAGCT 87080 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 87079 ATCAATCTGTC 87069 >seq3694 Length=9729 Score = 154 bits (170), Expect = 2e-35 Identities = 167/218 (77%), Gaps = 24/218 (11%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| Sbjct 6228 CATTGTAGCGCGCGTGCAGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTC- 6285 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC--CATAGTC 134 |||||| | || || | | || | |||||||||||||| | | ||| ||| | | Sbjct 6286 AACTTCGAGTGCCT-CACGGCACTTGTCCCTCTAAGAAGTGA---ATGAACGGCATCGCC 6341 Query 135 G---ATGGGG-------------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | | | || ||| ||| ||| || |||||||||||||||||||| Sbjct 6342 GCAAAAGCGGTTCGCTCGCCTCACTAATTAATAGGCTAGAGTCTCGTTCGTTATCGGAAT 6401 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 |||||||||||||||||||||||||| |||||||||| Sbjct 6402 AAACCAGACAAATCACTCCACCAACTACGAACGGCCAT 6439 >seq9989 Length=1629657 Score = 102 bits (112), Expect = 1e-19 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 170 TATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 ||| ||| | |||||||||||| ||||||||||||||||||||||||||||| ||| | Sbjct 553547 TATTGGACTCAACCAGACAAATTGCTCCACCAACTAAGAACGGCCATGCACCATGACCTA 553488 Query 230 TAGAATCAAGAAAGAGCTATCAATCT 255 |||||| |||| ||||||| ||||| Sbjct 553487 AAGAATCGAGAACGAGCTATAAATCT 553462 >seq2357 Length=19124 Score = 86.0 bits (94), Expect = 1e-14 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 77 ||||| |||||||||| |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 298 AGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 240 Query 78 ACTTCCATTGGCTGGAAGCCAATAGTCCC 106 | || || ||| | |||| | ||||| Sbjct 239 TC-TCGTGTGACTGAACGCCACTTGTCCC 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796721420580