Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq3694 306 6e-81 seq10118 179 6e-43 seq9950 165 1e-38 seq97 136 7e-30 seq10062 134 2e-29 seq9901 113 8e-23 seq9964 107 3e-21 seq411 105 1e-20 seq10003 102 1e-19 seq9943 98.7 2e-18 seq981 96.9 6e-18 seq406 93.3 7e-17 seq3130 91.5 3e-16 seq9966 84.2 4e-14 seq1043 84.2 4e-14 seq9877 78.8 2e-12 >seq3694 Length=9729 Score = 306 bits (338), Expect = 6e-81 Identities = 228/265 (86%), Gaps = 3/265 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 3172 TCAACAGTAGGGTAAAACTAACCTGTCTCGCGACGGTCTAAACCCAGCTCACGTTCCCTA 3231 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||| |||||||||||||||||||| || || ||| || ||||||||||||||||| Sbjct 3232 TTAATGGGTGAACAATCCAACGCTATGGGACTTTTGCATCCCAATGATAGGAAGAGCCGA 3291 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| |||||||| || ||||||||| |||||||||||||||||| Sbjct 3292 CATCGAAGGATCAAAAAGCGACGTCGCTGTGGACGCTTGGCCGCCACAAGCCAGTTATCC 3351 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCG--AGGGACTAAAGGATCGATA 268 ||||||||||||||||| ||||||| | || ||| ||| | | |||||||||| | Sbjct 3352 CTGTGGTAACTTTTCTGACACCTCTTG-CTTAAAACTCGTAAAATTCAAAAGGATCGACA 3410 Query 269 GGCCACACTTTCATGGTTTGTATTC 293 |||| |||||||| || | ||||| Sbjct 3411 AGCCAAACTTTCATTGTCTTTATTC 3435 >seq10118 Length=4072169 Score = 179 bits (198), Expect = 6e-43 Identities = 122/137 (89%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 99 TGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAG 158 |||||||||||| ||| |||||||||||| ||||||||||||||||||| |||| Sbjct 3289039 TGAACAATCCAAGTCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACACTGAAG 3289098 Query 159 GATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218 ||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 3289099 GATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCGGTTATCCCTGTGGTA 3289158 Query 219 ACTTTTCTGGCACCTCT 235 |||||||| ||||||| Sbjct 3289159 ACTTTTCTATCACCTCT 3289175 >seq9950 Length=1913468 Score = 165 bits (182), Expect = 1e-38 Identities = 161/206 (78%), Gaps = 16/206 (8%) Strand=Plus/Minus Query 40 GGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGT 99 ||||||||| ||||| ||||||||| || ||||||||||||||| ||||||||||||| Sbjct 1406735 GGGTAAAACGAACCTTTCTCATGACAACCTCAACCCAGCTCACGTTTCCTATTAGTGGGT 1406676 Query 100 GAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGG 159 ||||||| ||||| ||| |||||||||||| |||||||| ||| |||| Sbjct 1406675 GAACAATTCAACGATTAGTGAATTCTGCTTC-----GATAGGAA---ACGA-----AAGG 1406629 Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219 ||||| |||| | || | |||| ||||| |||||||||| || |||||||||||| Sbjct 1406628 ---AAAAATCAACATTGCAAGGAACTCTTGGTCACCACAAGCCATTTGTCCCTGTGGTAA 1406572 Query 220 CTTTTCTGGCACCTCTAGCCTCAAAT 245 |||||||| || ||| || | |||| Sbjct 1406571 CTTTTCTGACATCTCCTGCTTAAAAT 1406546 >seq97 Length=638139 Score = 136 bits (150), Expect = 7e-30 Identities = 89/98 (91%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||||| |||||||||||||||| || |||||||||||||| ||||||||||||| Sbjct 206207 ATCAGTAGGGTTAAACTAACCTGTCTCACGATGGTCTAAACCCAGCACACGTTCCCTATT 206148 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 |||| |||||||||||||| ||| |||||||||||| Sbjct 206147 AGTGAGTGAACAATCCAACACTTGGTGAATTCTGCTTC 206110 >seq10062 Length=1207771 Score = 134 bits (148), Expect = 2e-29 Identities = 100/116 (86%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 68 CTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGC 127 ||| |||||||| |||||| |||||||||||| ||||||||||||||| ||||||||||| Sbjct 343800 CTACACCCAGCTTACGTTCACTATTAGTGGGT-AACAATCCAACGCTTGCCGAATTCTGC 343742 Query 128 TTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAA 183 ||| |||| |||||||||| ||| ||||||||||| ||||| | |||||||| Sbjct 343741 TTCACAATGAAAGGAAGAGCCAGTATCAAAGGATCAAAAGGCAACATTGCTATGAA 343686 >seq9901 Length=2316506 Score = 113 bits (124), Expect = 8e-23 Identities = 79/90 (88%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 |||||||||||| || ||||| ||| |||||||| | ||||||||||| ||||||||| Sbjct 978781 ATGATAGGAAGAACCAACATCAAAGATTCAAAAAGGGATGTCGCTATGAATGCTTGGCTG 978722 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTT 223 |||||||||||||||||| |||||||||| Sbjct 978721 TCACAAGCCAGTTATCCCTATGGTAACTTT 978692 >seq9964 Length=1760987 Score = 107 bits (118), Expect = 3e-21 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 325890 AACCCAGCTCACATTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTC 325831 Query 131 GGTATGATAGGAAGAGC 147 |||||||||||||| Sbjct 325830 ACAATGATAGGAAGAGC 325814 Score = 96.9 bits (106), Expect = 6e-18 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 325790 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTT 325731 Query 130 C 130 | Sbjct 325730 C 325730 >seq411 Length=311611 Score = 105 bits (116), Expect = 1e-20 Identities = 111/145 (77%), Gaps = 7/145 (5%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| |||||| ||| ||||||||||| || ||| |||||||| || ||||| |||| Sbjct 53331 TCATCAATAGGGTTAAAGCAACCTGTCTCACGAGGGTGTAAACCCATCTAACGTTTCCTA 53272 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||| | | |||| |||| |||| |||||||||||| | | | | ||||| | Sbjct 53271 TTAGTGAGGGGACAACCCAAGGCTTGGTGAATTCTGCTTCAATTTCACAAGAAGA----A 53216 Query 151 CATCGAAGGATC---AAAAAGCAAC 172 ||| ||| |||| ||||| |||| Sbjct 53215 CATTGAACGATCACTAAAAATCAAC 53191 >seq10003 Length=1530964 Score = 102 bits (112), Expect = 1e-19 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||||||||||||| |||||||| |||||||||| ||||||||| |||||||||| Sbjct 415439 ATCAGTAGGGTAAAACTAATCTGTCTCACGACGGTCTAATCCCAGCTCATGTTCCCTATT 415380 Query 93 AGTGGG 98 |||||| Sbjct 415379 AGTGGG 415374 >seq9943 Length=4897111 Score = 98.7 bits (108), Expect = 2e-18 Identities = 59/62 (95%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| Sbjct 3866396 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGATCTAACCCCAGCTCACGTTCCCTATT 3866455 Query 93 AG 94 || Sbjct 3866456 AG 3866457 >seq981 Length=91887 Score = 96.9 bits (106), Expect = 6e-18 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 |||||||||||||| |||||| ||||||||||| ||| | ||||||||| | || Sbjct 33026 ATGATAGGAAGAGCTGACATCACAGGATCAAAAAACAATATTGCTATGAACATTAGGTCA 32967 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGG 253 |||||| ||| |||||||||||||| ||||| ||||| || ||||| | | Sbjct 32966 ACACAAGGTAGTAATCCCTGTGGTAACGTTTCTTATACCTCCCGCTTCAAACCCTAAACG 32907 Query 254 ACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | |||| || ||||| |||||| ||| |||||||| Sbjct 32906 TCAGAAGGGTCATCAGGCCTTGCTTTCACGGTCTGTATTCA 32866 >seq406 Length=277207 Score = 93.3 bits (102), Expect = 7e-17 Identities = 88/111 (79%), Gaps = 6/111 (5%) Strand=Plus/Minus Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 ||||| ||||||||| || |||| || || |||| ||| ||||||||||| Sbjct 164211 GCTTAATGAATTCTGCGTCACAATGAC-----GA-CCAACATTAAAGAGTCAAAAAGCAA 164158 Query 172 CGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222 ||| ||||| | |||||||| ||||||||||||||||||| |||||||||| Sbjct 164157 CGTTGCTATTAGCGCTTGGCCGCCACAAGCCAGTTATCCCCGTGGTAACTT 164107 >seq3130 Length=10447 Score = 91.5 bits (100), Expect = 3e-16 Identities = 139/201 (69%), Gaps = 24/201 (12%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||| ||||||| ||| |||||| |||| |||| | ||| | |||||| | Sbjct 2022 ATCAGTAGGCTAAAACT----TGTTTCATGATGGTCCAAACTCTGCTGAAGTTCCCCACG 1967 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||| | ||| ||| ||| | ||| |||| |||||| |||| Sbjct 1966 AGTAGTTGAGCAA-------CTTCCACAATA-------------ATAGAAAGAGCTGACA 1927 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 || ||| ||| |||||||| | | |||||| ||||| ||||||| |||||||||| Sbjct 1926 TCAAAGAATCTAAAAGCAATATTACCATGAACATTTGGCCAACACAAGCTAGTTATCCCT 1867 Query 213 GTGGTAACTTTTCTGGCACCT 233 |||| ||||| ||| ||||| Sbjct 1866 GTGGAAACTTGTCTTACACCT 1846 >seq9966 Length=1805758 Score = 84.2 bits (92), Expect = 4e-14 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTC 86 |||||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 425134 ATCAGTAGGGTAAAACTAACCTGTCTCACAACGGTCTAATCCCAGCTCACGTTC 425187 >seq1043 Length=84240 Score = 84.2 bits (92), Expect = 4e-14 Identities = 139/202 (69%), Gaps = 23/202 (11%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||||||| ||||||| |||||| |||||| |||| |||| ||| | ||||||| Sbjct 17988 ATCAGTAGGCTAAAACTTACCTGTTTCATGATGGTCCAAACT--GCTGAA-TTCCCTACG 18044 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||| | ||| ||| ||| | ||| ||||| |||||| |||| Sbjct 18045 AGTAGTTGAGCAA-------CTTCCACAAT-------------GATAGAAAGAGCTGACA 18084 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 || | |||||||||||| | | || ||| ||||| ||||||| |||||||||| Sbjct 18085 TCATTGAATCAAAAAGCAATATTACCATTAACATTTGGCCAACACAAGCTAGTTATCCCT 18144 Query 213 GTGGTAACTTTTCTGGCACCTC 234 ||| ||||| ||| ||||| Sbjct 18145 GTGAAAACTTGTCTTATACCTC 18166 >seq9877 Length=2811521 Score = 78.8 bits (86), Expect = 2e-12 Identities = 46/48 (96%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTC 80 |||||||||||||||||||||||||||| |||||||||| |||||||| Sbjct 510122 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAGCCCAGCTC 510075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854313022080