Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq3694 78.8 6e-13 seq746 73.4 2e-11 seq2357 71.6 8e-11 >seq3694 Length=9729 Score = 78.8 bits (86), Expect = 6e-13 Identities = 69/81 (85%), Gaps = 4/81 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| ||||| || |||||||| ||||||||||| |||||||||| Sbjct 6024 TCCGAA-GACCTCACTAAACCATTCGAT-CGGTAGTA-GCGACGGGCGGTGTGTACAAAG 6080 Query 99 GGCAGGGACGTAATACAACGC 119 ||||||||| || | |||||| Sbjct 6081 GGCAGGGACTTAGT-CAACGC 6100 >seq746 Length=116330 Score = 73.4 bits (80), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 3/71 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| ||| ||||||| ||||| ||||| ||||||||||||||||||| Sbjct 87492 CTCACTAAACCATCCAATT-GGTAGTA-GCGACAGGCGGTGTGTACAAAGGGCAGGGACT 87435 Query 109 TAATACAACGC 119 |||| |||||| Sbjct 87434 TAAT-CAACGC 87425 >seq2357 Length=19124 Score = 71.6 bits (78), Expect = 8e-11 Identities = 54/61 (89%), Gaps = 2/61 (3%) Strand=Plus/Minus Query 64 CATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGC 123 || ||||||||| ||||||||||| |||||||||||||||||| |||| |||||| ||| Sbjct 485 CAATCGGTAGTA-GCGACGGGCGGTATGTACAAAGGGCAGGGACTTAAT-CAACGCGAGC 428 Query 124 T 124 | Sbjct 427 T 427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300771292400