Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq2357 174 3e-41 seq746 143 5e-32 seq3694 127 4e-27 seq9942 102 2e-19 >seq2357 Length=19124 Score = 174 bits (192), Expect = 3e-41 Identities = 173/223 (78%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| |||||||||| || Sbjct 237 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCAC 295 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 ||| | | || | || | |||| |||| ||| |||||| | | || | Sbjct 296 ACTAAGTGGATCAGCATGTGTCTACCCTTCGCCGAGAGGCGCGGGTAACCCGCTGAACCC 355 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||| | ||||| | | |||||||||||| | | |||||||||||| || |||||| Sbjct 356 CACTCGTGATTGGGATTGGGGATTGCAATTATTTCCCATCAACGAGGAATTCCCAGTAAG 415 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| |||| ||| ||||||||||| |||||||||||||||| Sbjct 416 CGCGGGTCACAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTA 458 >seq746 Length=116330 Score = 143 bits (158), Expect = 5e-32 Identities = 189/259 (73%), Gaps = 20/259 (8%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 87211 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 87268 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || || || | Sbjct 87269 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGTGGATCAGCGTGTGTCTAC 87328 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAAC-TCTGTCGTGCTGGGGATAGAGCATT 249 |||| || | ||| ||||||| | ||| ||| | ||||| | ||||| | | ||| Sbjct 87329 CCTTCGCAGAGAGGCGTGGGTAA-CCCGTTGAACACCACTCGTGATAGGGATTGGGGATT 87387 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | |||||||||| || |||||| ||||||||| Sbjct 87388 GCAATTATTTCCCATGAACGAGGAATTCCCAGTAAG---------------CGCGTTGAT 87432 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 87433 TAAGTCCCTGCCCTTTGTA 87451 >seq3694 Length=9729 Score = 127 bits (140), Expect = 4e-27 Identities = 186/257 (72%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||||||| | | | || | | |||||| ||| ||||||||||||||||| Sbjct 6323 CTTCTTAGAGGGACAAGTGCCGTGAGGCACTCGAAGTT-GAG-CAATAACAGGTCTGTGA 6266 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||||| |||| |||||||||||||| || | ||| || | | | Sbjct 6265 TGCCCTTAGATGTTCGGGGCTGCACGCGCGCTACAATGGAGGCTTCAAAAAG--CGT-TC 6209 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 || ||| |||| || |||| | || | || | | ||||| | |||| Sbjct 6208 CTGATCCGAAAGGAGCAGGGAATC--ATAAATAGCCTTCACGATTGGGATCGGAGATTGT 6151 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 ||||||| || | || ||||||| |||||||| |||| |||| | |||||||| || Sbjct 6150 AATTATTCTTCGTGAAAGAGGAATTCCTAGTAAACGCGAATCATTATTTCGCGTTGACTA 6091 Query 312 CGTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 6090 AGTCCCTGCCCTTTGTA 6074 >seq9942 Length=4958163 Score = 102 bits (112), Expect = 2e-19 Identities = 162/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATG-CCCTTAGATGTTCTGGGCCGCACGCGCGCT 163 ||| ||||| |||||||||| |||||| ||||||||||| | |||||||| | | | Sbjct 3764007 AAGATTGAGA-AATAACAGGTAGGTGATGTCCCTTAGATGTCCGGGGCCGCATACTCACC 3764065 Query 164 ACACTGACAGAGCCAACGAGTT-CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAA 222 |||||| | ||| ||| | | ||||| | | |||| ||||||| || |||| Sbjct 3764066 CCACTGAGGGGAACAATAAGTGACTTAACCTTCACAGAGAGGTGTGGGTAACCTGCTTAA 3764125 Query 223 ACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGT 282 | | | ||| | | ||| | | |||||||||||| | | | | ||||||| || ||| Sbjct 3764126 CCACACTTGTGATAGAGATTGGGGATTGCAATTATTCCCCGTGAGTGAGGAATTCCCAGT 3764185 Query 283 -AAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| || |||| || || ||||| | |||||||||||||||| Sbjct 3764186 AAAGTTTGTTTCATAAGTTTGCATTGATGAAGTCCCTGCCCTTTGTA 3764232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947103575040