Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq552 392 1e-106 seq2430 241 4e-61 seq3694 235 2e-59 seq10002 208 2e-51 seq785 192 2e-46 seq535 178 4e-42 seq10081 134 5e-29 seq9980 107 6e-21 seq560 75.2 4e-11 >seq552 Length=225834 Score = 392 bits (434), Expect = 1e-106 Identities = 369/466 (79%), Gaps = 27/466 (6%) Strand=Plus/Minus Query 11 TGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTT 70 ||||| | |||| ||||||| |||| |||| | |||||||||||||| |||| |||| Sbjct 30355 TGCTCCGCGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGAGTTACCGTTT 30296 Query 71 AACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCC 130 |||| ||| ||||||||| ||||||||||||||| || ||||| ||| Sbjct 30295 GACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGCCA-----------CCGGAGCGGGG 30247 Query 131 CGCGAAGGACCTTAACGCCAGAAAATGG-TCGGTGAAGACCAGTTCCGCTTCATTGATTA 189 || | || | | ||| | | || ||| | | |||| ||| | || Sbjct 30246 TGCCA--GAACCGAGAGCCCGCTCAGGGCTCG--------CCTTCCCGCCTCACCGGGTA 30197 Query 190 AGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-CCGAAACGGCTCCCACTTATT 248 ||| ||||||||||||| ||||||||||||||| ||| ||| | | |||||||||||| Sbjct 30196 AGTGAAAAAACGATAAGAGTAGTGGTATTTCACCCGCGGCCGGAGC--CTCCCACTTATT 30139 Query 249 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 308 |||||||||||| ||| ||||| | | |||| ||||||||||||||||||||||||| Sbjct 30138 CTACACCTCTCATGTCTCTTCACGGTGCCAGACTGGAGTCAAGCTCAACAGGGTCTTCTT 30079 Query 309 TCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 368 ||||| ||||||| |||||||||||||||||||||| ||||||||| ||| || |||| Sbjct 30078 TCCCCACTGATTCTGCCAAGCCCGTTCCCTTGGCTGGGGTTTCGCTGGATGAGAGTTAGG 30019 Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 30018 TACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 29959 Query 429 GCTACCTTAAGAGAG-TCATAGTTACTCCCGC-CGTTTACCCGCGC 472 ||||||| ||||||| || ||||||||||| ||||||| ||||| Sbjct 29958 GCTACCTAAAGAGAGAGCACCGTTACTCCCGCACGTTTACTCGCGC 29913 >seq2430 Length=17840 Score = 241 bits (266), Expect = 4e-61 Identities = 157/170 (92%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | || Sbjct 6465 TCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGAGC 6524 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 6525 TAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 6584 Query 425 TTTGGCTACCTTAAGAGAG-TCATAGTTACTCCCGC-CGTTTACCCGCGC 472 ||||||||||| ||||||| || ||||||||||| ||||||| ||||| Sbjct 6585 TTTGGCTACCTAAAGAGAGAGCACCGTTACTCCCGCACGTTTACTCGCGC 6634 Score = 158 bits (174), Expect = 4e-36 Identities = 92/95 (97%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 11769 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACAT 11828 Query 499 TCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||| ||||||||| Sbjct 11829 TCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 11863 >seq3694 Length=9729 Score = 235 bits (260), Expect = 2e-59 Identities = 279/371 (75%), Gaps = 19/371 (5%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||| |||||| ||| ||||||| | | |||| ||||||||||||||||||| Sbjct 3469 CTTTCGCTCTATGCGAGGTTTCTGTCCACGCTGAGATTGCCTTAGGACACCTGCGTTAGA 3528 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGA-- 124 |||||||||||| ||||||||| ||||||||||| | | | ||| |||| || || Sbjct 3529 TTTTAACAGATGTACCGCCCCAGTCAAACTCCCCATCAGTCTGTGTTCTCAAACCAGACA 3588 Query 125 -TCGGCCCGCGA-AGGACC--TTA-ACGCCAGAAAATGGTCGGTGAAGACCAGTTCC--G 177 | || | | |||| | | || | | |||| | ||| | | ||| | Sbjct 3589 CTTATTCCACTAGAGGAATAATCATACATC-GCAAATAGC----GAATTCACGCTCCCTG 3643 Query 178 CTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGC 237 | ||||| |||||||| ||||||| | |||||||||||||||| ||| | Sbjct 3644 ATCAATTGAGTAAGTAAAGAAACGATGATAGTAGTGGTATTTCACTGTCGCGTC-----C 3698 Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 |||||| ||||||||||| ||| || ||||||||| | ||||||||||||||||||| Sbjct 3699 TCCCACCTATTCTACACCCATCATGTTTCTTCACAAAGACTGACTAGAGTCAAGCTCAAC 3758 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 3759 AGGGTCTTCTTTCCCCGCTGATTCTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGG 3818 Query 358 TAGTAGATAGG 368 | | ||||||| Sbjct 3819 TTGCAGATAGG 3829 Score = 96.9 bits (106), Expect = 1e-17 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 468 CGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCG 527 ||||||||| ||| || ||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 8287 CGCGCTTGGATGAGTTCCTTCACTTTAACATTCAGAGCACTGGGCAGAAATCACATCGCG 8346 Query 528 TCAACA 533 |||||| Sbjct 8347 TCAACA 8352 >seq10002 Length=1474258 Score = 208 bits (230), Expect = 2e-51 Identities = 142/160 (89%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 |||||||||||||||||||||| ||| ||||| | | |||||||||||||||||||| Sbjct 253274 CCCACTTATTCTACACCTCTCATGTCTCTTCACGGTGCCAGACTAGAGTCAAGCTCAACA 253215 Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358 |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 253214 GGGTCTTCTTTCCCTGCTGATTATGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGAT 253155 Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 | || | |||||||||||||||| ||| ||||||||||| Sbjct 253154 GGGAGCTGGGGACAGTGGGAATCTTGTTCATCCATTCATG 253115 >seq785 Length=139575 Score = 192 bits (212), Expect = 2e-46 Identities = 132/149 (89%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 311 CCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGA 370 ||||||||||| |||||||||||||||||||||||||||||||| ||| | || |||||| Sbjct 88065 CCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATGGGAGTTAGGGA 88124 Query 371 CAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGC 430 || ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 88125 CAATGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGTGGCATTTGGC 88184 Query 431 TACCTTAAGAGAGTCATAGTTACTCCCGC 459 || || || |||| |||||||| || Sbjct 88185 TAGCTAAATAGAGAGCACGTTACTCCTGC 88213 Score = 138 bits (152), Expect = 4e-30 Identities = 79/81 (98%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 115266 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGAC 115207 Query 497 ATTCAGAGCACTGGGCAGAAA 517 ||||||||||||||||||||| Sbjct 115206 ATTCAGAGCACTGGGCAGAAA 115186 Score = 78.8 bits (86), Expect = 3e-12 Identities = 46/48 (96%), Gaps = 0/48 (0%) Strand=Plus/Minus Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCT 435 |||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 87890 ATCCATTCATGCGCGTCACTAATTAGATGACGTGGCATTTGGCTAGCT 87843 >seq535 Length=194252 Score = 178 bits (196), Expect = 4e-42 Identities = 185/240 (77%), Gaps = 21/240 (9%) Strand=Plus/Plus Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGC-GCCGAAACGGCTCCCACT 244 |||||| |||||| ||| || ||||||||||||||| | || | | | |||||||| Sbjct 21019 ATTAAGAGAAAAAATGATGAG--TAGTGGTATTTCACTGGTAGCTGGAGC--CTCCCACT 21074 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 |||||||||||||||| ||| | ||| | | ||||||||||| |||||||||||||| Sbjct 21075 TATTCTACACCTCTCATGTCTCTCCACGGTGCCAGACTAGAGTCAGGCTCAACAGGGTCT 21134 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC-TAGATA---- 359 ||||||||||||||||| |||||||| |||||||||||| | ||| || || || Sbjct 21135 TCTTTCCCCGCTGATTCTGCCAAGCCTGTTCCCTTGGCTATTGTTCGGCGGAGTTAGCGA 21194 Query 360 --------GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 411 | || |||||||||||||||||||||| ||| |||| || |||||||| Sbjct 21195 CTCCGCCGGGAGTTAGGGACAGTGGGAATCTCGTTCATCAGTTCACGC---ACACTAATT 21251 >seq10081 Length=1167338 Score = 134 bits (148), Expect = 5e-29 Identities = 125/158 (79%), Gaps = 13/158 (8%) Strand=Plus/Minus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||| ||||||||||||||||||||||||| |||||||| || ||| | |||||||| | Sbjct 586457 GAGCCAAGCTCAACAGGGTCTTCTTTCCCTGCTGATTCTGCTAAGTGTGCTCCCTTGGTT 586398 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 ||||||||||| ||| | || |||| ||||||||||| |||||||| || Sbjct 586397 GTGGTTTCGCTGGATGGGAGTTAGGAACAGTGGGAAT----------CATTCATG-ACG- 586350 Query 404 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441 | | | |||||||||||||| ||||||||||||||| Sbjct 586349 -AATGACGAGATGACGAGGCATCTGGCTACCTTAAGAG 586313 >seq9980 Length=1773268 Score = 107 bits (118), Expect = 6e-21 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 1019897 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 1019838 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| ||||||||| ||| |||||| |||| || |||| Sbjct 1019837 GTTTGACAGGTGTACCGCCCCAGTCAACCTCCCCCCCTGCCACTGTC 1019791 >seq560 Length=210410 Score = 75.2 bits (82), Expect = 4e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 || ||||| || |||| ||||| | |||| |||| ||||||||||||| || | | Sbjct 67921 TTCTGCTCCACGGGAGGTTTCTTTCCTCCCTGAGCATATCTTAGGACACCTGTGTCACTG 67980 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| || ||||| ||||| || |||||| || |||| Sbjct 67981 TTTGACAGGTGTAACGTCCCAGTCAAACACCTCACCTGCCACTGTC 68026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635033536640