Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq981 91.5 2e-16 seq2430 87.8 3e-15 seq9893 75.2 2e-11 >seq981 Length=91887 Score = 91.5 bits (100), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 33136 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 33193 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 | |||||||||||||||| |||||||| | ||| ||||||||||||||||| |||| Sbjct 33194 GGGGCGAAGCTACCATCTGTGGGATTATGACAAAACACCTCTAAGTCAGAATCC-TGCC 33251 >seq2430 Length=17840 Score = 87.8 bits (96), Expect = 3e-15 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 5 GAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCG 64 |||| |||||| | |||||| | ||||| | || | || |||| || || || | Sbjct 4084 GAGACCAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGG 4027 Query 65 CGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 ||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 4026 CGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 3977 >seq9893 Length=2472794 Score = 75.2 bits (82), Expect = 2e-11 Identities = 67/84 (80%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | || |||| || || || |||||||||||||||| | |||||| Sbjct 2387138 TTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGTATTATGA 2387197 Query 91 CTGAACGCCTCTAAGTCAGAATCC 114 |||||||||| ||||||||||||| Sbjct 2387198 CTGAACGCCTATAAGTCAGAATCC 2387221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819119211520