Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fundulus_20heteroclitus_20[refseq_20GCF_5F000826765.1_202015-01-21] 10,180 sequences; 1,021,898,560 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq10130 327 9e-85 seq348 132 4e-26 seq9909 109 4e-19 >seq10130 Length=961328 Score = 327 bits (362), Expect = 9e-85 Identities = 997/1520 (66%), Gaps = 47/1520 (3%) Strand=Plus/Minus Query 65416 GTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGT 65475 |||| | |||| || |||||||||||||| || || || ||| ||||||||| || Sbjct 296316 GTGAGGGTTGACGATCTGGAACTCGCCGGAGAGGACCCGGCGGGTGTAGATGTTGCTGGT 296257 Query 65476 GATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGG 65535 | || || | ||| || ||||||| || || ||||| || || || || |||||||| Sbjct 296256 GTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCGGTGGGCATGGG 296197 Query 65536 AGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCA 65595 || | || || ||| | || |||| | | || || | || | ||| Sbjct 296196 GGCCAGCAGCAGGCTGTTCCTCACGCCGTGCCGGGCGATCTTCTCCTTCAGCAGCTTCCA 296137 Query 65596 GTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGAT 65655 || ||||| ||| | | | | || | ||||| || | || || || Sbjct 296136 GTCCCACA--GGTCGGTGGGGGTCTTCTCC----CACATGTCGTACTGGAGCACCCCCCG 296083 Query 65656 ACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCT 65715 ||| | || || || | | | ||||| ||| |||| || || | ||||| Sbjct 296082 GCTGACGGGCGAGCCCTCGTACGTCTCGTAGGGGCCCAGCTCCGCCGCCAGCTCGCAGCT 296023 Query 65716 GGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTC 65775 || ||| || ||||| || ||||||||||| || | || || | ||||| Sbjct 296022 GGCCTCCAGCGCGGCGTGGTAGATGGTCTCGAAGATCTGGACGTTGAGCAGCTGCGCCTC 295963 Query 65776 ATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAAT 65835 |||||||| |||| | |||||||| || | |||||||||||| || || || || Sbjct 295962 GGCGCTCTCGAACGGGTAGCGCATCAGGATGAAGGCGTCGGCCAGACCCTGGACGCCGAT 295903 Query 65836 ACCGATGGGACGATGACGCAAATTGGAACGTCTCG-CCTCAGGTACAGGGTAGTAATTGA 65894 |||||||| || || ||| ||||| || |||| |||| || || |||||||| || | Sbjct 295902 GCCGATGGGCCGGTGGCGCTTGTTGGAGCG-CTCGGCCTCGGGGACCGGGTAGTAGTTTA 295844 Query 65895 TATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGAT-ACGTCG--CAATTGTT 65951 | ||||| | |||| || |||| | | | | ||| || || | | Sbjct 295843 TCTCGATGACCTTGTTCAGGTTCT---TCACGATCACCTTGGTGACGGCGGCCAGCTTCT 295787 Query 65952 CGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAA 66011 ||| || || | || ||||| ||| || ||| ||| ||||| | Sbjct 295786 TGAAGTCGAAG------GTCCGCTCGGGCGTGACGTACATG------TTG---AGGGCGA 295742 Query 66012 GAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGC 66071 || || ||||||||||| || | |||||| ||| |||| || | ||||||| Sbjct 295741 TGGAGGCCAGGTTGCAGACGGCCACCTCGTCCTTGCTGGTGAACTCCACCACCTCGGTGC 295682 Query 66072 ACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCAT 66131 | || || ||||| |||||||||| ||||| || || |||||||| ||||| || | Sbjct 295681 AGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGT 295622 Query 66132 CCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAA 66191 ||||||| | |||||| || ||||||||||| || ||||| |||||||||| ||| | Sbjct 295621 CCTTGTAGAGCATGTAGGGCGTGCCGGTCTCCGTCTGCGACTCGATGATGGCGTACCACA 295562 Query 66192 GAGCGCGTGCCTTCACCGTACGTAC--CGCCCTACCTTTGCGTTCGTAATGTTCGTAGAG 66249 | | ||||||||| || | | | ||| || | ||||| | | |||||| Sbjct 295561 GCTGCTGGGCCTTCACC--ACCTTCTTCACCCGCCCCTCCGCCTCGTACTTTGTGTAGAG 295504 Query 66250 GTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAG 66309 ||||| || ||||| ||| ||| | ||||||| | ||||||||||| Sbjct 295503 CGTCTCGAACTCCTCCCCCCAGCACTCGTCCAGGCCGGGACACTCGCTGGGACACATCAG 295444 Query 66310 CGACCAATCACCATCCTGTTCT--ACACGACGCATAAATAGATCAGGTATCCAGAGGGCG 66367 ||||| | || || ||| || || | ||| || || || || ||||| ||| || Sbjct 295443 GGACCAGT--CCTGGTTGCTCTCCACCCGCCTCATGAACAGGTCGGGGATCCACAGGCCG 295386 Query 66368 TAGAAGAGATCGCGTGCTCGTTGCTCCTCAATG-CCGTGATTTTTGCGCAAGTCGAGGAA 66426 |||||||| || | || || |||||||| || ||||| || || || || ||||| Sbjct 295385 TAGAAGAGGTCCCTGGCCCGCTGCTCCTCCTTGCCCGTG-TTCTTCTTCAGCTCCAGGAA 295327 Query 66427 CTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCC 66486 || || | |||| ||||| || |||||||| |||||||| | ||| | ||| Sbjct 295326 GTCGAACACGTCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCGCCGGGCCTCTTGTT 295267 Query 66487 GCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCC 66546 ||| || ||||| |||||||| ||| |||||| |||| |||| |||||| || || || Sbjct 295266 GCCGCCCTGGTCCACGTAGCGGGCGGTGTTGTTGTAGACCCGCAGCATCGGCACCAGGCC 295207 Query 66547 GTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACAT 66605 ||| || ||||| ||||||||| |||| | | | | ||| | || || | || Sbjct 295206 GTTGGAGTTGCCGTTGGTGCCGGCGAT-GTAGCTGCCCGTCGAGCGGATGCAGCTCACCG 295148 Query 66606 TCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATA 66665 || || || || ||||||| ||| |||||| || || | | || | | | Sbjct 295147 CCACGCCGATGCCGCCGGCCGACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTCGTAGA 295088 Query 66666 TGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA--TGAACTAAGTTGGGGTTT 66723 |||| || ||| ||| |||| |||| ||| ||| |||| || || || || || Sbjct 295087 TGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGAC--AGCTGCGGCCG 295030 Query 66724 GGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTA 66783 | ||| |||| |||||| || || | |||||||| || | | |||| Sbjct 295029 GTTGGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTGAACCACTTCTCCGACAGCAG 294970 Query 66784 ATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTG-CACATCGCA 66842 ||||||||||||||| | || || |||| ||| || ||||| | | ||| |||| Sbjct 294969 GTTGTACGTCTCGATGGCGGCGTCGATGTCCCGGCCGTGGATCCCCACCGACAC-GCGCA 294911 Query 66843 TCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTT 66902 | || | || || ||||| ||| ||| | | ||||| | || | ||||||||| | Sbjct 294910 TGAGCATGTGCTGCGGCCGCTCGGCCACCTTCCCGTTGATCTTCAGCAGGTAGGAGCGCT 294851 Query 66903 CCAGGGTCTTGATACCAAAG 66922 |||||||||||| || ||| Sbjct 294850 CCAGGGTCTTGAAGCCGAAG 294831 >seq348 Length=361584 Score = 132 bits (146), Expect = 4e-26 Identities = 103/123 (84%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| |||||||||||| ||| ||||||| | ||||||||||| ||||||| Sbjct 110629 TGGAGCGCTTCATGCAGGAGGTGCAGGTGCCGGAGGCCAGGTGTTTCTACGGGTTCCAGA 110570 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | || ||||| || |||||||||| Sbjct 110569 TCGCCATGGAGAACATCCACTCTGAGATGTACAGCCTGCTGATCGACACCTACATCAGGG 110510 Query 61376 AGC 61378 ||| Sbjct 110509 AGC 110507 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 61483 GGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCC 61542 ||||| || || |||| || || | || ||||| | || ||| || ||||| ||| Sbjct 109575 GGTGAGCGTGTGGTGGCCTTCGCCGCCGTGGAGGGCATCTTCTTCTCCGGCTCGTTCGCC 109516 Query 61543 GCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTG 61602 || ||||| ||| ||||||| | || || |||||||| |||||||||||||| ||| | Sbjct 109515 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTC 109456 Query 61603 AT-ATCACGCGACGAGG 61618 || | || | ||||||| Sbjct 109455 ATCAGCA-GAGACGAGG 109440 >seq9909 Length=2276304 Score = 109 bits (120), Expect = 4e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| | ||||| ||||||||||| ||| | |||||||||| ||| || || Sbjct 1378312 GTGTACTCTATGATTTCTGTGCACAGATTGCTGGACTTGATGGTGCCCAGATTTTGCTGG 1378253 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || |||| | ||||| || |||||||| | ||||||||| ||||| ||||| || Sbjct 1378252 TTGGTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTGCCCGTCTCTGTCTGC 1378193 Query 66170 GACTCAATGATGGCGTGCCAAAG 66192 ||||| |||||||||||||| || Sbjct 1378192 GACTCGATGATGGCGTGCCAGAG 1378170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397518674235200