Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gadus_20morhua_20[genbank_20GCA_5F000231765.1_202011-08-26] 427,427 sequences; 824,311,139 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5389 224 8e-54 seq92481 111 1e-19 seq3661 105 5e-18 seq1508 95.1 1e-14 >seq5389 Length=131951 Score = 224 bits (248), Expect = 8e-54 Identities = 602/914 (66%), Gaps = 10/914 (1%) Strand=Plus/Minus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || || |||||||| || || | |||||| ||| ||||||| || || |||||| Sbjct 37472 GAGGCCAGGTTGCACACGGCGACCTCGTCCCCGCTGGTGTACTCGATGATCTCCGTGCAC 37413 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 || || ||| | ||| ||||| ||||| || || |||||||| ||||| || ||| Sbjct 37412 AGGTTGCTGGACTTGATGCAGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGCGTCC 37353 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193 ||||| | |||||| || ||||| ||||| || ||||| |||||||||||||| | Sbjct 37352 TTGTAGAGCATGTAGGGCGTGCCCGTCTCCGTCTGCGACTCGATGATGGCGTGCCACACC 37293 Query 66194 GCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGT 66253 ||||||||||| || ||| | || ||||| ||| || | Sbjct 37292 TGCTGTGCCTTCACCACGCGCTTGGCCTTGCCCGCCGCCTCGTAGCCGGTGTACAGCTTC 37233 Query 66254 TCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGAC 66313 || || || ||||| ||| ||| | || || | || || |||||||| ||| Sbjct 37232 TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAGTCGTTGGGGCACATCAGGGAC 37173 Query 66314 CAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAG 66373 || || | || || | ||| || || || || ||||| | | ||||||| Sbjct 37172 CATTCCTGGTTGGACTCCACCCTCTTCATGAACAGGTCGGGGATCCACATGCCGTAGAAC 37113 Query 66374 AGATCGCGTGCTCGTTGCTCCTCAATG-CCGTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432 || ||||| || || |||||||| || ||||| || || || || |||||||| || Sbjct 37112 AGGTCGCGGGCGCGCTGCTCCTCCTTGCCCGTG-TTCTTCTTCAGCTCCAGGAACTCGAA 37054 Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492 || |||||| ||||| || |||||||| |||||||| | || || ||| ||| || Sbjct 37053 GACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCCCCGGGGCGCTTGTTGCCGCC 36994 Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552 ||||| |||||||| || |||||| | || |||| ||| || || || ||||| || Sbjct 36993 CTGGTCCACGTAGCGCGCCGTGTTGTTGTACACGCGCAGCATGGGCACCAGGCCGTTGGA 36934 Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTCAGAC 66611 ||||| ||||||||| |||| | | ||| ||| || || || | || || | Sbjct 36933 GTTGCCGTTGGTGCCGGCGAT-GTAGCTCCCCGTGGCGCGGATGCAGCTCACCGCCACGC 36875 Query 66612 CAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGT 66671 | || || || |||| ||| |||||| || || | | || | | ||||| | Sbjct 36874 CGATGCCGCCCGCCGACTTGGAGATGAGCGCGCACTGCTTGAGCGTGTCGTAGATGCCCT 36815 Query 66672 CAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGG 66731 | ||| ||| |||| |||| ||| ||| |||| || || || ||| | ||| Sbjct 36814 CGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGCTGAGCTGCGGTCGGTTGGTGC 36755 Query 66732 CGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACG 66791 |||| ||| || ||||| | |||||||| || | | |||| ||||||| Sbjct 36754 CGGCGTTGAACAGCGTGGGCGAGGCGTGCGTGAACCACTTCTCCGACAGCAGGTTGTACG 36695 Query 66792 TCTCGATGACAGCATCAATGT---TTTCGCCATGAATCCCGAGTGCACATCGCATCAGGA 66848 |||| | | | || || |||| | | | || || || | || | |||||| | Sbjct 36694 TCTCCACGGCGGCGTCGATGTCCCTCTTG---TGGATGCCCACCGCCACCCTCATCAGCA 36638 Query 66849 GGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGG 66908 || || ||||| || ||| | | ||||| | || | ||| ||||| ||||| | Sbjct 36637 TGTGCTGCGGCCGCTCCGCCACCTTGCCGTTGATCTTCAGCAGGTACGAGCGCTCCAGCG 36578 Query 66909 TCTTGATACCAAAG 66922 |||||| || ||| Sbjct 36577 TCTTGAAGCCGAAG 36564 >seq92481 Length=981 Score = 111 bits (122), Expect = 1e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| ||||| || || ||| | ||||| || || |||||||| ||||||| Sbjct 311 TGGAGCGCTTCAGCCAGGAAGTTCAGGTGACCGAGGCCCGCTGCTTCTACGGTTTCCAGA 252 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | ||||| ||||| ||||||| || Sbjct 251 TCGCCATGGAGAACATCCACTCTGAGATGTACAGCCTGCTCATAGATACCTACATCAAGG 192 Query 61376 A 61376 | Sbjct 191 A 191 >seq3661 Length=2364936 Score = 105 bits (116), Expect = 5e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 61271 AGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATG 61330 |||| || || ||| | ||||| || || |||||||| |||||||| ||||||||||| Sbjct 461121 AGGAAGTTCAGGTGACCGAGGCCCGCTGCTTCTACGGTTTCCAGATCGCCATGGAGAACA 461062 Query 61331 TCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 ||||||| ||||||||||| | ||||| ||||| ||||||| ||| Sbjct 461061 TCCACTCTGAGATGTACAGCCTGCTCATAGATACCTACATCAAGGA 461016 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 61483 GGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCC 61542 ||||| ||| || | || || || | || || || | |||||| ||| ||||||||| Sbjct 460738 GGTGAGCGAGTGGTCGCTTTCGCTGCTGTGGAAGGAATCTTTTTCTCTGGCTCGTTTGCC 460679 Query 61543 GCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGA 61598 | ||||| ||| ||||||| | || || |||||||||||||||||| |||||| Sbjct 460678 TCCATCTTCTGGCTGAAGAAGAGGGGGCTAATGCCCGGTCTGACCTTCTCCAATGA 460623 >seq1508 Length=1569309 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| | ||||||| || | ||||| || |||||||| ||| ||||| Sbjct 106857 CAGGAGGTGCAGATCCCGGAGGCTCGCTCCTTCTATGGTTTCCAGATCCTCATTGAGAAC 106916 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATC 61371 |||||||| ||||||||||| | |||||| ||||||||||| Sbjct 106917 GTCCACTCAGAGATGTACAGCATGCTCATCAATACGTACATC 106958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395496962311280