Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq15037 154 6e-35 seq14950 154 6e-35 seq14867 154 6e-35 seq11623 154 6e-35 seq11622 154 6e-35 seq14982 149 3e-33 seq10112 140 1e-30 seq15403 125 3e-26 seq15347 125 3e-26 seq11614 125 3e-26 seq14890 109 2e-21 seq2818 84.2 9e-14 >seq15037 Length=12961 Score = 154 bits (170), Expect = 6e-35 Identities = 103/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 10277 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 10336 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 10337 GGCCCGCAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 10391 Score = 125 bits (138), Expect = 3e-26 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| ||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 9481 GAGTCGGGTTGTTTGTGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 9540 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 9541 ACCGGCGCGAGACCGATAGCCGACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGAAG 9600 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || ||||||| ||||| ||| || Sbjct 9601 AGAGAGTTCAACAGGGCGTGAAACCGTTGAGAGGTAA 9637 >seq14950 Length=6505 Score = 154 bits (170), Expect = 6e-35 Identities = 103/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 717 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 658 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 657 GGCCCGCAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 603 Score = 131 bits (144), Expect = 7e-28 Identities = 123/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| ||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 1513 GAGTCGGGTTGTTTGTGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 1454 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| |||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 1453 ACTGGCGCGAGACCGATAGCCGACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGAAG 1394 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || ||||||| ||||| ||| || Sbjct 1393 AGAGAGTTCAACAGGGCGTGAAACCGTTGAGAGGTAA 1357 >seq14867 Length=12646 Score = 154 bits (170), Expect = 6e-35 Identities = 103/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 4167 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 4108 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 4107 GGCCCGCAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 4053 Score = 123 bits (136), Expect = 1e-25 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 ||||| |||||||| ||||||||| | || ||| |||||| | | ||||| |||||||| Sbjct 4962 AGTCGGGTTGTTTGTGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAATA 4903 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 ||| |||||||||||| ||||||| | | ||||| ||||||| |||||| | | Sbjct 4902 CCGGCGCGAGACCGATAGCCGACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGAAGA 4843 Query 161 GAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 ||||||| || || ||||||| ||||| ||| || Sbjct 4842 GAGAGTTCAACAGGGCGTGAAACCGTTGAGAGGTAA 4807 >seq11623 Length=4631 Score = 154 bits (170), Expect = 6e-35 Identities = 103/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 4086 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 4027 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 4026 GGCCCGCAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 3972 >seq11622 Length=15083 Score = 154 bits (170), Expect = 6e-35 Identities = 103/115 (90%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 432 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 373 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 372 GGCCCGCAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 318 Score = 125 bits (138), Expect = 3e-26 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| ||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 1228 GAGTCGGGTTGTTTGTGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 1169 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 1168 ACCGGCGCGAGACCGATAGCCGACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGAAG 1109 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || ||||||| ||||| ||| || Sbjct 1108 AGAGAGTTCAACAGGGCGTGAAACCGTTGAGAGGTAA 1072 >seq14982 Length=13690 Score = 149 bits (164), Expect = 3e-33 Identities = 102/115 (89%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||| Sbjct 9793 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAACCTCTGGTGGA 9852 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 9853 GGCCCGCAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 9907 Score = 125 bits (138), Expect = 3e-26 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| ||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 8997 GAGTCGGGTTGTTTGTGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 9056 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 9057 ACCGGCGCGAGACCGATAGCCGACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGAAG 9116 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || ||||||| ||||| ||| || Sbjct 9117 AGAGAGTTCAACAGGGCGTGAAACCGTTGAGAGGTAA 9153 >seq10112 Length=18371 Score = 140 bits (154), Expect = 1e-30 Identities = 99/112 (88%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 6631 GACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAG 6572 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT-CAAATTTGGGTATAGGGG 680 || ||||||||| ||| ||||||||||| |||| | | |||||||||||| Sbjct 6571 GCCCGCAGCGGTCCTGACGTGCAAATCGGTCGTCCGGACCTGGGTATAGGGG 6520 Score = 125 bits (138), Expect = 3e-26 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| ||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 7442 GAGTCGGGTTGTTTGTGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 7383 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 7382 ACCGGCGCGAGACCGATAGCCGACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGAAG 7323 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || ||||||| ||||| ||| || Sbjct 7322 AGAGAGTTCAACAGGGCGTGAAACCGTTGAGAGGTAA 7286 >seq15403 Length=9273 Score = 125 bits (138), Expect = 3e-26 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| ||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 6054 GAGTCGGGTTGTTTGTGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 5995 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 5994 ACCGGCGCGAGACCGATAGCCGACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGAAG 5935 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || ||||||| ||||| ||| || Sbjct 5934 AGAGAGTTCAACAGGGCGTGAAACCGTTGAGAGGTAA 5898 Score = 120 bits (132), Expect = 1e-24 Identities = 77/84 (92%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 5259 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 5200 Query 629 GGCTCGCAGCGGTTCTGGCGTGCA 652 ||| ||||||||| ||| |||||| Sbjct 5199 GGCCCGCAGCGGTCCTGACGTGCA 5176 >seq15347 Length=9587 Score = 125 bits (138), Expect = 3e-26 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||||| || || |||||||||||||||||||||| | ||| ||| ||||| ||| | Sbjct 3507 GAGCATATATGCTGTGACCCGAAAGATGGTGAACTATACTTGATCAGGTTGAAGTCAGGG 3448 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 ||||| ||| |||| | || | | |||||| ||||||||||||| |||| | ||| ||| Sbjct 3447 GAAACCCTGATGGAAGACCGAAACAGTTCTGACGTGCAAATCGATTGTCAGAATTGAGTA 3388 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 3387 TAGGGGCGA 3379 Score = 120 bits (132), Expect = 1e-24 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| |||| |||| |||||| | | |||||| |||||| Sbjct 4208 GAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGTGGTAAACTCCATCTAAAACTAAAT 4149 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||| ||||||| |||| ||||| ||||||| ||| || | Sbjct 4148 ATAACCATGAGACCGATAGTAAACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAAT 4089 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 ||||||||||| || |||||||| || | | ||| Sbjct 4088 AGAGAGTTAAACAGTACGTGAAACTGCTTAGAGG 4055 >seq11614 Length=4861 Score = 125 bits (138), Expect = 3e-26 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| ||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 320 GAGTCGGGTTGTTTGTGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 261 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| |||||||||||| ||||||| | | ||||| ||||||| |||||| | Sbjct 260 ACCGGCGCGAGACCGATAGCCGACAAGTACCTTAAGGGAAAGTTGAAAAGAACTTTGAAG 201 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||| || || ||||||| ||||| ||| || Sbjct 200 AGAGAGTTCAACAGGGCGTGAAACCGTTGAGAGGTAA 164 >seq14890 Length=13128 Score = 109 bits (120), Expect = 2e-21 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 5417 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 5358 Query 629 G-GCTCGCAGCGGTTCTGGCGTGCA 652 | || |||||||| ||| |||||| Sbjct 5357 GAGCCGGCAGCGGTCCTGACGTGCA 5333 >seq2818 Length=170449 Score = 84.2 bits (92), Expect = 9e-14 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 573 CCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT 632 ||| ||||||||||||||| |||| | ||| || ||||||||||||||||| ||||| Sbjct 79121 CCGGAAGATGGTGAACTATTCCTGCGTTGGGCAAATCCAGAGGAAACTCTGGTAGAGGCC 79180 Query 633 CGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 || |||| ||| ||||| |||| ||||| Sbjct 79181 CGTGGCGGCCCTGATGTGCAGATCGGTCGTC 79211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079636272350