Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq15037 235 9e-60 seq14982 235 9e-60 seq14950 235 9e-60 seq14867 235 9e-60 seq11624 235 9e-60 seq11617 235 9e-60 seq11614 235 9e-60 seq10112 235 9e-60 seq14842 230 4e-58 seq11622 228 1e-57 seq15347 167 4e-39 seq10553 149 1e-33 seq3775 75.2 2e-11 >seq15037 Length=12961 Score = 235 bits (260), Expect = 9e-60 Identities = 203/247 (82%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 8087 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 8029 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC-CAGCCACCAACCATAGTC 134 || || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 8028 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTACTTGCGCCGACCGCACGG 7970 Query 135 GATGGGGC---TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | || || |||||| | ||||||||||||||||||||||||||||||||| Sbjct 7969 GGCCGCGCCACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 7910 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| Sbjct 7909 CGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTGTCA 7850 Query 252 ATCTGTC 258 ||||||| Sbjct 7849 ATCTGTC 7843 >seq14982 Length=13690 Score = 235 bits (260), Expect = 9e-60 Identities = 203/247 (82%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 7610 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 7552 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC-CAGCCACCAACCATAGTC 134 || || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 7551 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTACTTGCGCCGACCGCACGG 7493 Query 135 GATGGGGC---TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | || || |||||| | ||||||||||||||||||||||||||||||||| Sbjct 7492 GGCCGCGCCACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 7433 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| Sbjct 7432 CGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTGTCA 7373 Query 252 ATCTGTC 258 ||||||| Sbjct 7372 ATCTGTC 7366 >seq14950 Length=6505 Score = 235 bits (260), Expect = 9e-60 Identities = 203/247 (82%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 2888 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 2946 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC-CAGCCACCAACCATAGTC 134 || || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 2947 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTACTTGCGCCGACCGCACGG 3005 Query 135 GATGGGGC---TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | || || |||||| | ||||||||||||||||||||||||||||||||| Sbjct 3006 GGCCGCGCCACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 3065 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| Sbjct 3066 CGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTGTCA 3125 Query 252 ATCTGTC 258 ||||||| Sbjct 3126 ATCTGTC 3132 >seq14867 Length=12646 Score = 235 bits (260), Expect = 9e-60 Identities = 203/247 (82%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 6358 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 6416 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC-CAGCCACCAACCATAGTC 134 || || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 6417 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTACTTGCGCCGACCGCACGG 6475 Query 135 GATGGGGC---TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | || || |||||| | ||||||||||||||||||||||||||||||||| Sbjct 6476 GGCCGCGCCACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 6535 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| Sbjct 6536 CGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTGTCA 6595 Query 252 ATCTGTC 258 ||||||| Sbjct 6596 ATCTGTC 6602 >seq11624 Length=8207 Score = 235 bits (260), Expect = 9e-60 Identities = 203/247 (82%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 1100 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 1158 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC-CAGCCACCAACCATAGTC 134 || || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 1159 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTACTTGCGCCGACCGCACGG 1217 Query 135 GATGGGGC---TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | || || |||||| | ||||||||||||||||||||||||||||||||| Sbjct 1218 GGCCGCGCCACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 1277 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| Sbjct 1278 CGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTGTCA 1337 Query 252 ATCTGTC 258 ||||||| Sbjct 1338 ATCTGTC 1344 >seq11617 Length=2758 Score = 235 bits (260), Expect = 9e-60 Identities = 203/247 (82%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 1271 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 1329 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC-CAGCCACCAACCATAGTC 134 || || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 1330 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTACTTGCGCCGACCGCACGG 1388 Query 135 GATGGGGC---TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | || || |||||| | ||||||||||||||||||||||||||||||||| Sbjct 1389 GGCCGCGCCACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 1448 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| Sbjct 1449 CGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTGTCA 1508 Query 252 ATCTGTC 258 ||||||| Sbjct 1509 ATCTGTC 1515 >seq11614 Length=4861 Score = 235 bits (260), Expect = 9e-60 Identities = 203/247 (82%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 1707 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 1765 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC-CAGCCACCAACCATAGTC 134 || || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 1766 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTACTTGCGCCGACCGCACGG 1824 Query 135 GATGGGGC---TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | || || |||||| | ||||||||||||||||||||||||||||||||| Sbjct 1825 GGCCGCGCCACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 1884 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| Sbjct 1885 CGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTGTCA 1944 Query 252 ATCTGTC 258 ||||||| Sbjct 1945 ATCTGTC 1951 >seq10112 Length=18371 Score = 235 bits (260), Expect = 9e-60 Identities = 203/247 (82%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 8840 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 8898 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC-CAGCCACCAACCATAGTC 134 || || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 8899 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTACTTGCGCCGACCGCACGG 8957 Query 135 GATGGGGC---TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | || || |||||| | ||||||||||||||||||||||||||||||||| Sbjct 8958 GGCCGCGCCACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 9017 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| Sbjct 9018 CGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTGTCA 9077 Query 252 ATCTGTC 258 ||||||| Sbjct 9078 ATCTGTC 9084 >seq14842 Length=15651 Score = 230 bits (254), Expect = 4e-58 Identities = 202/247 (82%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 1110 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 1168 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC-CAGCCACCAACCATAGTC 134 || || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 1169 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTACTTGCGCCGACCGCACGG 1227 Query 135 GATGGGGC---TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | || || |||||| | |||||||||| |||||||||||||||||||||| Sbjct 1228 GGCCGCGCCACTAGTTAGCATGCCGGAGTCTCGTTCGCTATCGGAATTAACCAGACAAAT 1287 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| Sbjct 1288 CGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTGTCA 1347 Query 252 ATCTGTC 258 ||||||| Sbjct 1348 ATCTGTC 1354 >seq11622 Length=15083 Score = 228 bits (252), Expect = 1e-57 Identities = 203/248 (82%), Gaps = 7/248 (3%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| |||||||||| |||| | ||||||||||||||||||||||||||||||| || Sbjct 2621 TCAGTGTGGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-TC 2679 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC-CAGCCACCAACCATAGTC 134 || || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 2680 AATCT-CGTGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTACTTGCGCCGACCGCACGG 2738 Query 135 GATGGGGC---TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | || || |||||| | ||||||||||||||||||||||||||||||||| Sbjct 2739 GGCCGCGCCACTAGTTAGCATGCCGGAGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 2798 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAA-GAGCTATC 250 | |||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| || Sbjct 2799 CGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGGAGCTGTC 2858 Query 251 AATCTGTC 258 |||||||| Sbjct 2859 AATCTGTC 2866 >seq15347 Length=9587 Score = 167 bits (184), Expect = 4e-39 Identities = 97/100 (97%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 6322 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACGAACTAAGAACGGCCATGC 6381 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||| || ||||||||||||||||||||| Sbjct 6382 ACCACCACCCATAGATTCGAGAAAGAGCTATCAATCTGTC 6421 Score = 102 bits (112), Expect = 1e-19 Identities = 88/106 (83%), Gaps = 5/106 (5%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||| |||||||||||||| |||||| |||||||||||||||||||||||||||||| ||| Sbjct 6073 TCATTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 6131 Query 76 AAACTTCCAT--TGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119 || || ||| | ||| || || | | |||| | |||||||| || Sbjct 6132 AATCT--CATTATTGCTAGACGCAATTTGTCCATTTAAGAAGCTAG 6175 >seq10553 Length=49669 Score = 149 bits (164), Expect = 1e-33 Identities = 88/92 (96%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 163 CGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCA 222 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 46055 CGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCA 45996 Query 223 CCACCCATAGAATCAAGAAAGAGCTATCAATC 254 ||||||| |||||| |||||||||| |||||| Sbjct 45995 CCACCCACAGAATCGAGAAAGAGCTGTCAATC 45964 >seq3775 Length=234365 Score = 75.2 bits (82), Expect = 2e-11 Identities = 52/58 (90%), Gaps = 1/58 (2%) Strand=Plus/Plus Query 24 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTT 81 |||||| ||| |||| | ||||||||||||||||||||||||||||| ||||||||| Sbjct 113842 GCGCGCATGCAGCCCCGGCCATCTAAGGGCATCACAGACCTGTTATTG-CTCAAACTT 113898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796669108917