Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq15037 91.5 9e-17 seq14982 91.5 9e-17 seq14950 91.5 9e-17 seq14867 91.5 9e-17 seq14842 91.5 9e-17 seq11624 91.5 9e-17 seq11622 91.5 9e-17 seq11617 91.5 9e-17 seq11614 91.5 9e-17 seq10112 91.5 9e-17 seq15347 78.8 6e-13 >seq15037 Length=12961 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 ||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 8286 CTCACTAAGCCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 8229 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 8228 TAAT-CAACGCGAGCT 8214 >seq14982 Length=13690 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 ||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 7809 CTCACTAAGCCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 7752 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 7751 TAAT-CAACGCGAGCT 7737 >seq14950 Length=6505 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 ||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 2689 CTCACTAAGCCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 2746 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 2747 TAAT-CAACGCGAGCT 2761 >seq14867 Length=12646 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 ||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 6159 CTCACTAAGCCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 6216 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 6217 TAAT-CAACGCGAGCT 6231 >seq14842 Length=15651 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 ||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 911 CTCACTAAGCCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 968 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 969 TAAT-CAACGCGAGCT 983 >seq11624 Length=8207 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 ||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 900 CTCACTAAGCCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 957 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 958 TAAT-CAACGCGAGCT 972 >seq11622 Length=15083 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 ||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 2422 CTCACTAAGCCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 2479 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 2480 TAAT-CAACGCGAGCT 2494 >seq11617 Length=2758 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 ||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1072 CTCACTAAGCCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 1129 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 1130 TAAT-CAACGCGAGCT 1144 >seq11614 Length=4861 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 ||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 1508 CTCACTAAGCCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 1565 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 1566 TAAT-CAACGCGAGCT 1580 >seq10112 Length=18371 Score = 91.5 bits (100), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 ||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 8641 CTCACTAAGCCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 8698 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 8699 TAAT-CAACGCGAGCT 8713 >seq15347 Length=9587 Score = 78.8 bits (86), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 3/74 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| ||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 5877 CTCACTAAATAATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 5934 Query 109 TAATACAACGCAAG 122 |||| ||| || || Sbjct 5935 TAAT-CAATGCGAG 5947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300752181260