Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq15347 163 5e-38 seq15037 161 2e-37 seq14982 161 2e-37 seq14950 161 2e-37 seq14867 161 2e-37 seq14842 161 2e-37 seq11622 161 2e-37 seq11617 161 2e-37 seq11614 161 2e-37 seq10112 161 2e-37 seq11624 156 8e-36 seq3775 75.2 2e-11 >seq15347 Length=9587 Score = 163 bits (180), Expect = 5e-38 Identities = 172/223 (77%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 6136 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTAC 6078 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | ||| || ||||| || || ||| | ||| ||||| |||||| | | || | Sbjct 6077 AATGAAAGTATCAACGTGT--ATTTCCTAGACCGAGAGGTCCGGGTAAACCGCTGAACCA 6020 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || || |||| ||||| | | | || || | || | | | ||| ||||| || |||||| Sbjct 6019 CTTTCATGCTTGGGATTGTGAACTGAAACTGTT-CACATGAACTTGGAATTCCCAGTAAG 5961 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||| | | ||| |||||||||||||||||||||||| Sbjct 5960 TGTGAGTCATTAACTCGCATTGATTACGTCCCTGCCCTTTGTA 5918 >seq15037 Length=12961 Score = 161 bits (178), Expect = 2e-37 Identities = 193/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 7990 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 8047 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || | || | | Sbjct 8048 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGTGGCTCATCTGGTGCCTAC 8107 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || | || |||||| | | || | | ||||| | ||||| | | | || Sbjct 8108 CCTGCGCTGACAGACGCGGGTAACCCCCTGAACCCCACTCGTGATAGGGATTGGGGACTG 8167 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||| |||| | | | |||||||||| || |||||||||| |||| ||| |||||||||| Sbjct 8168 CAACTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGTTCATAAGCTCGCGTTGATT 8227 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 8228 AAGTCCCTGCCCTTTGTA 8245 >seq14982 Length=13690 Score = 161 bits (178), Expect = 2e-37 Identities = 193/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 7513 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 7570 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || | || | | Sbjct 7571 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGTGGCTCATCTGGTGCCTAC 7630 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || | || |||||| | | || | | ||||| | ||||| | | | || Sbjct 7631 CCTGCGCTGACAGACGCGGGTAACCCCCTGAACCCCACTCGTGATAGGGATTGGGGACTG 7690 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||| |||| | | | |||||||||| || |||||||||| |||| ||| |||||||||| Sbjct 7691 CAACTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGTTCATAAGCTCGCGTTGATT 7750 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 7751 AAGTCCCTGCCCTTTGTA 7768 >seq14950 Length=6505 Score = 161 bits (178), Expect = 2e-37 Identities = 193/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 2985 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 2928 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || | || | | Sbjct 2927 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGTGGCTCATCTGGTGCCTAC 2868 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || | || |||||| | | || | | ||||| | ||||| | | | || Sbjct 2867 CCTGCGCTGACAGACGCGGGTAACCCCCTGAACCCCACTCGTGATAGGGATTGGGGACTG 2808 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||| |||| | | | |||||||||| || |||||||||| |||| ||| |||||||||| Sbjct 2807 CAACTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGTTCATAAGCTCGCGTTGATT 2748 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 2747 AAGTCCCTGCCCTTTGTA 2730 >seq14867 Length=12646 Score = 161 bits (178), Expect = 2e-37 Identities = 193/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 6455 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 6398 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || | || | | Sbjct 6397 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGTGGCTCATCTGGTGCCTAC 6338 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || | || |||||| | | || | | ||||| | ||||| | | | || Sbjct 6337 CCTGCGCTGACAGACGCGGGTAACCCCCTGAACCCCACTCGTGATAGGGATTGGGGACTG 6278 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||| |||| | | | |||||||||| || |||||||||| |||| ||| |||||||||| Sbjct 6277 CAACTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGTTCATAAGCTCGCGTTGATT 6218 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 6217 AAGTCCCTGCCCTTTGTA 6200 >seq14842 Length=15651 Score = 161 bits (178), Expect = 2e-37 Identities = 193/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1207 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 1150 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || | || | | Sbjct 1149 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGTGGCTCATCTGGTGCCTAC 1090 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || | || |||||| | | || | | ||||| | ||||| | | | || Sbjct 1089 CCTGCGCTGACAGACGCGGGTAACCCCCTGAACCCCACTCGTGATAGGGATTGGGGACTG 1030 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||| |||| | | | |||||||||| || |||||||||| |||| ||| |||||||||| Sbjct 1029 CAACTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGTTCATAAGCTCGCGTTGATT 970 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 969 AAGTCCCTGCCCTTTGTA 952 >seq11622 Length=15083 Score = 161 bits (178), Expect = 2e-37 Identities = 193/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 2718 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 2661 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || | || | | Sbjct 2660 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGTGGCTCATCTGGTGCCTAC 2601 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || | || |||||| | | || | | ||||| | ||||| | | | || Sbjct 2600 CCTGCGCTGACAGACGCGGGTAACCCCCTGAACCCCACTCGTGATAGGGATTGGGGACTG 2541 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||| |||| | | | |||||||||| || |||||||||| |||| ||| |||||||||| Sbjct 2540 CAACTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGTTCATAAGCTCGCGTTGATT 2481 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 2480 AAGTCCCTGCCCTTTGTA 2463 >seq11617 Length=2758 Score = 161 bits (178), Expect = 2e-37 Identities = 193/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1368 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 1311 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || | || | | Sbjct 1310 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGTGGCTCATCTGGTGCCTAC 1251 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || | || |||||| | | || | | ||||| | ||||| | | | || Sbjct 1250 CCTGCGCTGACAGACGCGGGTAACCCCCTGAACCCCACTCGTGATAGGGATTGGGGACTG 1191 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||| |||| | | | |||||||||| || |||||||||| |||| ||| |||||||||| Sbjct 1190 CAACTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGTTCATAAGCTCGCGTTGATT 1131 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 1130 AAGTCCCTGCCCTTTGTA 1113 >seq11614 Length=4861 Score = 161 bits (178), Expect = 2e-37 Identities = 193/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1804 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 1747 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || | || | | Sbjct 1746 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGTGGCTCATCTGGTGCCTAC 1687 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || | || |||||| | | || | | ||||| | ||||| | | | || Sbjct 1686 CCTGCGCTGACAGACGCGGGTAACCCCCTGAACCCCACTCGTGATAGGGATTGGGGACTG 1627 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||| |||| | | | |||||||||| || |||||||||| |||| ||| |||||||||| Sbjct 1626 CAACTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGTTCATAAGCTCGCGTTGATT 1567 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 1566 AAGTCCCTGCCCTTTGTA 1549 >seq10112 Length=18371 Score = 161 bits (178), Expect = 2e-37 Identities = 193/258 (75%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 8937 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 8880 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || | || | | Sbjct 8879 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGTGGCTCATCTGGTGCCTAC 8820 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || | || |||||| | | || | | ||||| | ||||| | | | || Sbjct 8819 CCTGCGCTGACAGACGCGGGTAACCCCCTGAACCCCACTCGTGATAGGGATTGGGGACTG 8760 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||| |||| | | | |||||||||| || |||||||||| |||| ||| |||||||||| Sbjct 8759 CAACTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGTTCATAAGCTCGCGTTGATT 8700 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 8699 AAGTCCCTGCCCTTTGTA 8682 >seq11624 Length=8207 Score = 156 bits (172), Expect = 8e-36 Identities = 193/259 (75%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1197 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 1140 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||||||| ||||||| | || | || | | Sbjct 1139 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGTGGCTCATCTGGTGCCTAC 1080 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || | || |||||| | | || | | ||||| | ||||| | | | || Sbjct 1079 CCTGCGCTGACAGACGCGGGTAACCCCCTGAACCCCACTCGTGATAGGGATTGGGGACTG 1020 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGT-CATCAGCACGCGTTGAT 309 ||| |||| | | | |||||||||| || ||||||||| || ||| ||| ||||||||| Sbjct 1019 CAACTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCTGGTTCATAAGCTCGCGTTGAT 960 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 959 TAAGTCCCTGCCCTTTGTA 941 >seq3775 Length=234365 Score = 75.2 bits (82), Expect = 2e-11 Identities = 52/58 (90%), Gaps = 1/58 (2%) Strand=Plus/Minus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 ||||||||| ||||||||||||||||||||||||||||| | |||| ||| |||||| Sbjct 113898 AAGTTTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGGCCGGGGCTGCATGCGCGC 113842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947039383296