Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3008 237 1e-57 seq14194 118 8e-22 seq14193 118 8e-22 seq594 109 4e-19 >seq3008 Length=76608 Score = 237 bits (262), Expect = 1e-57 Identities = 617/925 (67%), Gaps = 32/925 (3%) Strand=Plus/Plus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || || ||||||||||| || | |||||| | ||| || ||||| ||||| ||||| Sbjct 40603 GAGGCCAGGTTGCAGACGGCGACCTCGTCGTGGCTGGTGTATTCGACGATTTCCGTGCAG 40662 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 || || ||| | |||||||||| |||||| || || ||||| | ||||| || || Sbjct 40663 AGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCTGTTGCAGGCGTCT 40722 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193 ||||||| |||||| || |||||||| || |||||||| |||||||||||||| || Sbjct 40723 TTGTACAGCATGTATGGCGTGCCGGTTTCGGTCTGGGACTCGATGATGGCGTGCCACAGC 40782 Query 66194 GCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTA--ATGTTCGTAGAGGT 66251 | | ||| ||| || ||||| || | ||||| | || |||||| | Sbjct 40783 TGCTGGGACTTGACCACGCGCTTGGCCCTCCCCTCCTTCTCGTAGGACGT--GTAGAGCT 40840 Query 66252 GTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCG 66311 ||| || || ||||| ||| ||| | || |||| || |||||||| || | Sbjct 40841 TTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATGAGGG 40900 Query 66312 ACCAATCACCATCCTGTTCT--ACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTA 66369 |||| | || || ||| || || ||| || || || || ||||| | |||||| Sbjct 40901 ACCAGT--CCTGGTTGCTCTCCACCCGCTTCATGAACAGGTCGGGGATCCACATGGCGTA 40958 Query 66370 GAAGAGATCGCGTGCTCGTTGCTCCT-CAATGCCGTGATTTTTGCGCAAGTCGAGGAACT 66428 ||| || || | |||| ||||||| | | ||||| || || || || ||||| | Sbjct 40959 GAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTCCAGGAAGT 41017 Query 66429 CAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGC 66488 | || | ||| ||||| || |||||||| |||||||| | ||| | ||| | Sbjct 41018 CGAACACGTCAAAGTGCCAGGGCTCCAGGTACATGGCGAAAGCGCCGGGTCTCTTGTTCC 41077 Query 66489 CACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGT 66548 | || ||||| ||||| || || |||||| | || | | ||| || |||||||||| Sbjct 41078 CGCCCTGGTCCACGTAACGCGCCGTGTTGTTGTAAACCCTTAGCATGGGGACGAGCCCGT 41137 Query 66549 TAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTC 66607 | || ||||| ||||||||| |||| | | | | ||| | || || | || | Sbjct 41138 TGGAGTTGCCGTTGGTGCCGGCGAT-GTAGCTGCCCGTCGAGCGGATGGAGCTGACGGCC 41196 Query 66608 AGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATG 66667 | || || || ||||| | || |||||| || || | || || | | ||| Sbjct 41197 ACGCCGATCCCCCCGGCTGATTTGGAGATGAGGGCGCACTGCTTCAAGGTGTCGTAGATG 41256 Query 66668 CCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCA--TGAACTAAGTTGGGGTTTGG 66725 || || ||| ||| |||| |||| || ||| |||| || || || || || || Sbjct 41257 CCCTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGAC--AGCTGTGGCCTGT 41314 Query 66726 GTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAAT 66785 ||| | || |||||||||||| | ||||| || || | |||| | Sbjct 41315 TGGTGCCCGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAACCACCTCTCCGACAGCAGGT 41374 Query 66786 TGTACGTCTCGATGACAGCATCAATGT---TTTCGCCATGAATCCCGA-GTGCACATCGC 66841 |||||||||||||| | || || |||| ||||| || ||||||| | ||| ||| Sbjct 41375 TGTACGTCTCGATGGCCGCGTCGATGTCCGTTTCG---TGGATCCCGACGGACAC-GCGC 41430 Query 66842 ATCAGGAGGTATTGAGGCCGTTCGACCA----GCCGATCCTTGATATGCATTAAGTAGGA 66897 || || | || || ||||| ||| ||| |||| ||||| | || | |||||| Sbjct 41431 ATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCG----TTGATCTTCAACAGGTAGGA 41486 Query 66898 GCGTTCCAGGGTCTTGATACCAAAG 66922 || ||||||||||||| || ||| Sbjct 41487 TCGCTCCAGGGTCTTGAAGCCGAAG 41511 >seq14194 Length=7087 Score = 118 bits (130), Expect = 8e-22 Identities = 100/123 (81%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||||||||| || ||||||| | |||||||| || ||||||| Sbjct 4028 TGGAGCGCTTCACCCAGGAGGTGCAGGTCACGGAGGCCAGATGTTTCTATGGTTTCCAGA 3969 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | |||||| | || ||||||| || Sbjct 3968 TCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTCCTCATCAACACCTACATCAAGG 3909 Query 61376 AGC 61378 ||| Sbjct 3908 AGC 3906 >seq14193 Length=36040 Score = 118 bits (130), Expect = 8e-22 Identities = 100/123 (81%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| | ||||||||||| || ||||||| | |||||||| || ||||||| Sbjct 32647 TGGAGCGCTTCACCCAGGAGGTGCAGGTCACGGAGGCCAGATGTTTCTATGGTTTCCAGA 32706 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||||||||| ||||||| ||||||||||| | |||||| | || ||||||| || Sbjct 32707 TCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTCCTCATCAACACCTACATCAAGG 32766 Query 61376 AGC 61378 ||| Sbjct 32767 AGC 32769 >seq594 Length=47165 Score = 109 bits (120), Expect = 4e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 66050 GTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGA 66109 || ||||| || || || ||||||||||| ||| | ||||||||||| |||||| || Sbjct 29789 GTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTTATGGTGCCCAGATTCTGCTGG 29848 Query 66110 TTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGG 66169 || ||||| | ||||| || |||||||| | ||||||||| || || || || || Sbjct 29849 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGTGTACCAGTTTCTGTCTGC 29908 Query 66170 GACTCAATGATGGCGTGCCA 66189 |||||||||||| ||| ||| Sbjct 29909 GACTCAATGATGCCGTACCA 29928 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 65151 GCCAAGCATAGAAATGCATCGATGATAATTTTGC-ATAATTCGGCTCGGCCACATGCATA 65209 ||||| ||||||| ||||| | || | | ||||| ||| || ||||| || | ||| ||| Sbjct 27066 GCCAACCATAGAAGTGCAT-GCTGGTCAGTTTGCCATAGTTTGGCTCTGCAATATGGATA 27124 Query 65210 TTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATGATACGA 65269 || | ||||| ||||| |||||||| |||||||||||| ||||| | | || | | Sbjct 27125 TTTAGGGACTGGCTCTGGTCGATGTAGGCACCACGATCTGCTGCCATCTTGAGGACA-GT 27183 Query 65270 CGTC-CCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATTGGAATCTCCTC 65328 | || || || ||||| || || || ||||| || | ||| || ||| |||| Sbjct 27184 CTTCTGGGAGATTTCCCACACAGTTTTATACAGCCGCTTCAGCTCGTCAGGGATCCCCTC 27243 Query 65329 AATGTCCTG 65337 ||| |||| Sbjct 27244 AATACCCTG 27252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397485837230480