Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq8762 104 1e-16 seq6030 100 1e-15 seq6293 91.5 6e-13 >seq8762 Length=117542 Score = 104 bits (114), Expect = 1e-16 Identities = 120/159 (75%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 ||||| || ||| || ||||||||| || ||| || | |||||||| | | |||||| Sbjct 31500 CTCGATCAGCATCCCGATGGTCATGCGGGAGGGGAAGCCGTGCGGGTTGAACAGGATGTC 31559 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTT--- 449103 ||| | | |||| | | |||||||||||||||| || | ||| ||||| | Sbjct 31560 GGGAGACATGCCGCTCTCTGTGAAGGGCATGTCCTC--GGCCGGCCA-CAGGCGACTCAG 31616 Query 449104 GACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCC 449142 || |||||||||||||||||||||| |||||||||||| Sbjct 31617 GATGCCCTTCTGGCCGTGGCGGCTGGCGAACTTGTCCCC 31655 >seq6030 Length=160462 Score = 100 bits (110), Expect = 1e-15 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 349096 GGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGAGGGT 349155 ||| || ||||| || |||||| | || | |||||||||||||||||| | |||||| Sbjct 99744 GGGTATTCCCAGAGTGACGTTCATCTCCCCTCTGCCGGCAAAGTGGAAGGTGTTGAGGGT 99803 Query 349156 CAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGCCGGG 349215 || ||| ||| |||||| |||||| |||| |||| |||| ||| ||| ||||||||| Sbjct 99804 CATCTGGGTGGAGGGCTCTCCGATGGACTGAGCCGCCAGGAGGCCCACCGCCTCGCCGGG 99863 >seq6293 Length=134847 Score = 91.5 bits (100), Expect = 6e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 349072 GGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCC 349131 ||||| || ||||| |||| | |||| |||||||| | |||| ||| ||| || || Sbjct 46489 GGCGTTGATGATCTCTTTGATGCGAGGCACTCCCAGGGTGATGTTCATGGACGCCACACC 46430 Query 349132 GGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGG 349186 ||||||||||||||| | ||||||| ||| || |||||| ||||||| |||| Sbjct 46429 GGCAAAGTGGAAGGTTTTCAGGGTCATCTGAGTACCGGGCTCCCCGATGCTCTGG 46375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084275219140686