Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq330 147 3e-33 seq146 107 3e-21 seq3236 84.2 3e-14 >seq330 Length=683855 Score = 147 bits (162), Expect = 3e-33 Identities = 167/216 (77%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||| |||||||| || ||||||||||||| ||||| ||||||||| |||||| | Sbjct 223146 GTACAAAGAGCAGGGACTTA-TCAACGCGAGCTT-ATGACCTGCGCTTACTGGGAATT-C 223202 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || |||| |||| || ||||| ||||||| ||||| | || Sbjct 223203 CTCGTTCATGGGAAATAATTCCAATCCTCAATCCCTATCACGAGTGGGGTTCAACGGGTT 223262 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGC 178 |||| ||| ||||| |||| | | || | ||| | || ||||||| |||||||||| Sbjct 223263 ACCCACGCCTCTCGGCGAAGGGTAGACACATGCTGA-TCCACTCAGTGTGGCGCGCGTGC 223321 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 214 |||| | |||||||||||||||||||||| || || Sbjct 223322 AGCCCCGGACATCTAAGGGCATCACAGACCAGTGAT 223357 >seq146 Length=1442430 Score = 107 bits (118), Expect = 3e-21 Identities = 167/235 (71%), Gaps = 19/235 (8%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||| ||| |||||| | |||||| ||| |||||| | Sbjct 948146 GTACAAAGGGCAGAGACTGAGTCAATGTGAGCTT--------------ACTGGGAATT-C 948102 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||| |||||| ||||| | || Sbjct 948101 CTCGTTCATGGGTAATAATTGCAATCCCCAATCCCTGTCACGAGTGGGGTTCAACGGGTT 948042 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGC 178 |||| | | ||||| |||| | | || || ||| | || ||||||| ||| |||||| Sbjct 948041 ACCCTAGCATCTCGGCGAAGGGTAGACACACGCTGA-TCCACTCAGTGTGGCGTGCGTGC 947983 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 947982 ACCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGTGTGGC 947929 >seq3236 Length=7054 Score = 84.2 bits (92), Expect = 3e-14 Identities = 70/83 (84%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCT 62 ||||||||||||||| || ||||||||||||| ||||| |||||||||| |||| ||||| Sbjct 2611 ACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCGCTTACTGGGAA-TTCCT 2668 Query 63 CGTTGAAGACCAACAATTGCAAT 85 ||| | | || ||||||||| Sbjct 2669 TGTTCATGGGAAATAATTGCAAT 2691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751941712715