Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haplochromis_20burtoni_20[refseq_20GCF_5F000239415.1_202011-12-22] 8,001 sequences; 831,411,547 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq348 336 4e-90 seq141 300 3e-79 seq5978 273 4e-71 seq413 210 4e-52 seq354 178 2e-42 seq723 165 1e-38 seq269 147 4e-33 seq432 123 4e-26 seq333 122 1e-25 seq714 107 3e-21 seq68 105 1e-20 seq209 100 5e-19 seq16 98.7 2e-18 seq2 89.7 9e-16 seq278 86.0 1e-14 seq72 84.2 4e-14 seq235 82.4 1e-13 seq54 82.4 1e-13 seq17 82.4 1e-13 seq384 77.0 6e-12 seq10 77.0 6e-12 seq112 75.2 2e-11 >seq348 Length=642861 Score = 336 bits (372), Expect = 4e-90 Identities = 253/295 (86%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 294272 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 294213 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 294212 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 294153 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 294152 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 294093 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 294092 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 294033 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | || | || |||| ||||| | |||||| ||| |||||||| Sbjct 294032 TAAAACCCAAAAGGTAT-GAGAATCGGGAGGCCCCGCTTTCACGGTCTGTATTCA 293979 >seq141 Length=1467792 Score = 300 bits (332), Expect = 3e-79 Identities = 227/265 (86%), Gaps = 7/265 (3%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||| ||||||||| | | |||||||||||||||||| |||||| Sbjct 1002691 TCATCAGTAGGGTAAAATGAACCTGTCTAA---CAGTCTAAACCCAGCTCACGCTCCCTA 1002635 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 1002634 TTAGTGGGTGAACAATCCAACGCTT---GAATTCTGCTTCACAATGATAGGAAGAGCCGA 1002578 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 1002577 CATCGAAGGATCAAAAAGTGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 1002518 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||| ||||||||||| ||||| ||| | ||| | | | | ||||||||| ||| Sbjct 1002517 CTGTGATAACTTTTCTGAAACCTCCAGCTTAAAACCCCCAAAGTCAAAAGGATCGTGAGG 1002458 Query 271 CCACACTTTCATGGTTTGTATTCAC 295 || | |||||| || ||||||||| Sbjct 1002457 CCCCGCTTTCA-CGTCTGTATTCAC 1002434 >seq5978 Length=1543 Score = 273 bits (302), Expect = 4e-71 Identities = 203/235 (86%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 16 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 75 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||| |||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 76 ACGACAGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAACCCAACGCTTGGTG 135 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||| ||||||| |||||||||||||||||||||||||||| ||||| ||| Sbjct 136 AATTCACA------ATGATAG-AAGAGCCGACATCGAAGGATCAAAAAGCGACGTCACTA 188 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 189 TGAATGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTC 243 >seq413 Length=533922 Score = 210 bits (232), Expect = 4e-52 Identities = 186/232 (80%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41 GGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTG 100 |||||||||||||||| ||||||| ||| ||||||||| | |||| |||||| | | Sbjct 127258 GGTAAAACTAACCTGTGTCATGAC----TAATCCCAGCTCATGCACCCTGTTAGTGAGCG 127203 Query 101 AACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGA 160 ||||||||||||||| |||||||||||| ||||| | |||||||||||||||||| Sbjct 127202 AACAATCCAACGCTTGTTGAATTCTGCTTCACAATGATGGAAAGAGCCGACATCGAAGGG 127143 Query 161 TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220 ||||||||| || | | |||||||| | |||||||||| ||||||||||||||||| Sbjct 127142 TCAAAAAGCGAC----CAAAGAACGCTTTCCCGCCACAAGCCTGTTATCCCTGTGGTAAC 127087 Query 221 TTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 ||||||| |||||| || | ||| | || | | |||||||| |||||| Sbjct 127086 TTTTCTGACACCTCCTGCTTAAAACCACAAGAGTCAGAAGGATCGTTAGGCC 127035 >seq354 Length=633091 Score = 178 bits (196), Expect = 2e-42 Identities = 110/118 (93%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 39 AGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGG 98 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 320368 AGAGTAAAACTAACCTGTCTCATGACGGTCTAATCCCAGCTCACGTTCCCTATTAGTGGG 320427 Query 99 TGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 320428 TGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGA 320485 >seq723 Length=214865 Score = 165 bits (182), Expect = 1e-38 Identities = 122/141 (87%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 92114 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 92055 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||| ||||||||||||||||||||||||||||||||||||||||||| | Sbjct 92054 ACGACGGTCTAATCCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 91995 Query 120 AATTCTGCTTCGGTATGATAG 140 ||||||||||| ||||||| Sbjct 91994 AATTCTGCTTCACAATGATAG 91974 >seq269 Length=834266 Score = 147 bits (162), Expect = 4e-33 Identities = 102/116 (88%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 65 GGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTC 124 ||||||| |||||||||||||||||||| || |||||||||||||||||||| |||||| Sbjct 370864 GGTCTAATCCCAGCTCACGTTCCCTATTGGTAGGTGAACAATCCAACGCTTAGTGAATTC 370923 Query 125 TGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||| || |||||||||||||| |||||||||||||| |||||| |||||||| Sbjct 370924 TGCGTCACAATGATAGGAAGAGCTTACATCGAAGGATCACAAAGCAGTGTCGCTAT 370979 >seq432 Length=499238 Score = 123 bits (136), Expect = 4e-26 Identities = 87/100 (87%), Gaps = 7/100 (7%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| |||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 401577 TCATCAGCAGGGTAAAACTAACCTGTCTCA-------CTAAACCCAGCTCATGTTCCCTA 401629 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||||||||||||||||||| ||||| |||||||||||| Sbjct 401630 TTAGTGGGTGAACAATCCAGCGCTTGGTGAATTCTGCTTC 401669 >seq333 Length=678477 Score = 122 bits (134), Expect = 1e-25 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 44 AAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAAC 103 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 71461 AAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCAAGTTCCCTATTAGTGGGTGAAC 71402 Query 104 AATCCAACGCTT 115 |||||||||||| Sbjct 71401 AATCCAACGCTT 71390 >seq714 Length=221811 Score = 107 bits (118), Expect = 3e-21 Identities = 81/94 (86%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 185330 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 185271 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTA 93 | |||||||||| ||||||||||||||||||||| Sbjct 185270 ACGACGGTCTAATCCCAGCTCACGTTCCCTATTA 185237 >seq68 Length=2261393 Score = 105 bits (116), Expect = 1e-20 Identities = 66/71 (93%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1609805 GAATTCTTCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTTGCT 1609864 Query 179 ATGAACGCTTG 189 ||||||||||| Sbjct 1609865 ATGAACGCTTG 1609875 >seq209 Length=1068595 Score = 100 bits (110), Expect = 5e-19 Identities = 82/100 (82%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || |||| |||||||||| |||||||| || ||| |||| | |||||||||||| || Sbjct 666869 TCGTCAGCAGGGTAAAACAAACCTGTCCCACGACAGTCTGATCCCAGCTCACGTACCTCC 666810 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||| | |||||||||||||||||| |||||||||||| Sbjct 666809 TTATTAAGTGAACAATCCAACGCTTGATGAATTCTGCTTC 666770 >seq16 Length=3911486 Score = 98.7 bits (108), Expect = 2e-18 Identities = 87/114 (76%), Gaps = 20/114 (18%) Strand=Plus/Minus Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 3125255 AACCCGTCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCT---------------- 3125212 Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC 184 ||| ||||||||| ||||| ||||||||||||||| |||| ||||||||| Sbjct 3125211 ----TGACAGGAAGAGCTGACATGGAAGGATCAAAAAGCGACGTTGCTATGAAC 3125162 >seq2 Length=7036168 Score = 89.7 bits (98), Expect = 9e-16 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 55 GTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAAC 111 |||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 4882338 GTCTCACGATGGTCTAAACCCAGCTCACGTTTCCTATTAGTGGGTGAACAATCCAAC 4882394 >seq278 Length=810341 Score = 86.0 bits (94), Expect = 1e-14 Identities = 126/177 (71%), Gaps = 11/177 (6%) Strand=Plus/Minus Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 |||||||| |||| | |||||||| | | |||| ||| || ||||| |||| Sbjct 771106 CGAATTCTACTTCAGAGTGATAGGAGCA-CTGACACTCAAG-ATAAAAAAACAAC----- 771054 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 ||||||||||||| | |||||||||||| ||||||||| ||||||| || ||| | Sbjct 771053 ----AACGCTTGGCTGCTAGAAGCCAGTTATCTCTGTGGTAAGTTTTCTGACATCTCCTG 770998 Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | | ||| | | | |||||| | ||||| |||||||||| |||| ||| Sbjct 770997 CTTTAAACCCAAAAAGTCAGAAGGATTGCGAGGCCCTTCTTTCATGGTCTGTAGTCA 770941 >seq72 Length=2209624 Score = 84.2 bits (92), Expect = 4e-14 Identities = 69/84 (82%), Gaps = 4/84 (5%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAG----CTCACGTTCC 87 ||||| ||| |||||||||| | |||| ||| |||||||||||| |||| ||||| Sbjct 180711 CATCACTAGAGTAAAACTAATGGGCCTCAGGACTGTCTAAACCCAGGTCACTCATGTTCC 180770 Query 88 CTATTAGTGGGTGAACAATCCAAC 111 || ||||||||||||||||| ||| Sbjct 180771 CTTTTAGTGGGTGAACAATCTAAC 180794 >seq235 Length=965616 Score = 82.4 bits (90), Expect = 1e-13 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 39 AGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGG 98 |||||||||||||||||||||| |||| ||| ||| ||||||||||| | |||| ||| Sbjct 438751 AGGGTAAAACTAACCTGTCTCACAACGGATTAA-CCCTGCTCACGTTCCTTGTTAGAGGG 438809 Query 99 TGAACAATCCAA 110 | |||||||||| Sbjct 438810 TTAACAATCCAA 438821 >seq54 Length=2439707 Score = 82.4 bits (90), Expect = 1e-13 Identities = 140/204 (69%), Gaps = 18/204 (9%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||| ||||||||| ||||||||||| |||||||||| | |||| ||| || Sbjct 2168275 TCATCAGGCGGGTAAAACGAACCTGTCTCA----GGTCTAAACCTGGGTCACTTTCTCTG 2168220 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || || || |||||| ||| | || |||||||||||| | |||| | Sbjct 2168219 CTATTGAGTAAACAATGCAAAGTTTGGTGAATTCTGCTTC------------ACAGCCAA 2168172 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 | ||| ||||| | || ||||||| ||||| | ||||||| |||||| | Sbjct 2168171 AACAGAA--ATCAACCCACTGAGTTGCTATGAGCGCTTAGACACCACAAGTCAGTTACCT 2168114 Query 211 CTGTGGTAACTTTTCTGGCACCTC 234 | |||| | ||| |||| || ||| Sbjct 2168113 CGGTGGGATCTTGTCTGACAGCTC 2168090 >seq17 Length=3728540 Score = 82.4 bits (90), Expect = 1e-13 Identities = 92/126 (73%), Gaps = 14/126 (11%) Strand=Plus/Minus Query 100 GAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGG 159 ||||||| ||| |||| |||||||||||| |||| |||||| | Sbjct 1189430 GAACAATTCAATGCTTGGTGAATTCTGCTTCACAATGAGAGGAAG--------------G 1189385 Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219 |||||||||||| || ||||||| || | ||||||||||||||| |||||||||| Sbjct 1189384 ATCAAAAAGCAAAATCACTATGAATGCGCGTTCACCACAAGCCAGTTATGCCTGTGGTAA 1189325 Query 220 CTTTTC 225 |||||| Sbjct 1189324 CTTTTC 1189319 >seq384 Length=581854 Score = 77.0 bits (84), Expect = 6e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 || || |||||||| ||||||||||||| ||| |||||| ||||||||||||||||| Sbjct 238968 ACATCACTATGAACTCTTGGCTGCCACAGGCCGGTTATCACTGTGGTAACTTTTCTG 239024 >seq10 Length=4620461 Score = 77.0 bits (84), Expect = 6e-12 Identities = 51/57 (89%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCC 87 || |||| |||||||||||||||||||||| ||| | |||| ||||||||||||||| Sbjct 1172126 TCTTCAGCAGGGTAAAACTAACCTGTCTCACGACAGCCTAACCCCAGCTCACGTTCC 1172070 >seq112 Length=1692099 Score = 75.2 bits (82), Expect = 2e-11 Identities = 71/88 (81%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| ||||| | |||| | || | ||||||| |||||||||||||||| ||| Sbjct 851886 TACTGAGCAGAATTCCTATTGCAACAACAGATCATCAGCAGGGTAAAACTAACCTCTCTT 851945 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCC 87 ||| |||||||| ||||||||| |||| Sbjct 851946 ATGGAGGTCTAAATCCAGCTCAC-TTCC 851972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854331639456